RNA id: AMCG00005891


Basic Information

Item Value
RNA id AMCG00005891
length 477
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00005891
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11670353 ~ 11674352 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCTGTGGTCTGTCAAACGCGGCCCTGGAGAAATAAATGGCGCTGGCCGGTCACTGAGCCGAGCAGCCAGCCAGATCGCCGCCCCGCTGTGGGCGACAGCTGAGCAGGAAAGCACCGCAGACCGCTCTCAggccccgcccccaccccccaccgcGCAGTCGCAGTCGCCCGCCTCACGCAGCTCACGCCTCATGAATATTCAAAGCGGCCGCGGAGGGGAGTCTGTGGCGTCCACGGCGGCGGCGCGTCAGCGTGGTGGAAATGGAAGCAAGATGGCGGCGCTGAAGGAGGAGCAGTGCTATGGACTGTCCTGCGGAAGAGTGAGCAATGGCAGCAACGTCTCCGTCTTTCACGTTAAACTCACTGACAGCGCCTTAAGAGCATTCGAGGGCTACCAGAGCAGCAAGGTAAGCGGTGGCTGCGGGTCCGTCTCGCTTCTCAACTTCGCCGGAAGACTTGTAGTCCTGCGGTag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195122 lncRNA downstream 55970 11613674 ~ 11614383 (-) True G154909
TU195118 lncRNA downstream 56742 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA downstream 56742 11609836 ~ 11613611 (-) True G154906
TU195046 lncRNA downstream 253965 11415817 ~ 11416388 (-) True G154848
TU195025 lncRNA downstream 294148 11374506 ~ 11376205 (-) False AMCG00005875
TU195177 lncRNA upstream 15388 11689740 ~ 11690048 (-) True G154954
TU195245 lncRNA upstream 257760 11932112 ~ 11932947 (-) True G155003
TU195312 lncRNA upstream 328788 12003140 ~ 12023672 (-) True G155058
TU195313 lncRNA upstream 333116 12007468 ~ 12017366 (-) True G155059
TU195331 lncRNA upstream 450809 12125161 ~ 12126128 (-) True G155073
AMCG00005888 mRNA downstream 21031 11637138 ~ 11649322 (-) True AMCG00005888
AMCG00005887 mRNA downstream 42421 11622428 ~ 11627932 (-) True AMCG00005887
AMCG00005890 mRNA downstream 53540 11615392 ~ 11616813 (-) True AMCG00005890
AMCG00005912 mRNA downstream 200593 11463610 ~ 11469760 (-) True AMCG00005912
AMCG00005911 mRNA downstream 213128 11453748 ~ 11457225 (-) True AMCG00005911
AMCG00005889 mRNA upstream 783 11675135 ~ 11680822 (-) True AMCG00005889
AMCG00005884 mRNA upstream 163649 11838001 ~ 11863038 (-) True AMCG00005884
AMCG00005900 mRNA upstream 222666 11897018 ~ 11902390 (-) True AMCG00005900
AMCG00005899 mRNA upstream 232214 11906566 ~ 11918065 (-) True AMCG00005899
AMCG00005901 mRNA upstream 244436 11918788 ~ 11930850 (-) True AMCG00005901
TU195020 other downstream 315720 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 331239 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 345286 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 757608 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 759921 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 997300 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1169426 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2493738 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2662539 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 2834881 14509233 ~ 14509614 (-) True G155770

Expression Profile