RNA id: TU195202


Basic Information

Item Value
RNA id TU195202
length 1534
RNA type TUCP
GC content 0.45
exon number 4
gene id AMCG00005895
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11903352 ~ 11906087 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAATCTTTATTGACAAGCTAGAGGACAACACATTGACAGGACCTTTCTGGAGTTGTCCTTGCGAAGTGCATGTGGCGTTGTAGGAGTCCGTAGcgctatatatagatatattcatTTAGTCTTGTTTCCGGTTTTGTcagtattatatttgttttcgcTTCGCTGTTGGATTGATGGCTCCCAGGATTTTCCCCCTAGTAAAGCTGGTGACCAAGGTAGGCGTGGCAGGGGGGGCAGTGTATGTGGCCTATGACCAGGGCCTGCTGGGGGGCAGTGCCCAGGGTTCGGAAGTGCTAAACAAGGCCAAAGCTGCAATCCCCCCAGCAGTGGATGAGTGGATGAAGTATCTGGGATGGGAGcTTCCTGCACCTCCAAAAATAGAGTTCTCCCCTTCTGAAACATGGAACTCCGGCGTCCAGAAGACGATGTCTGCCCTCTCCGTGGCCCCCACGAGAGCCTGCGAGTACAGCAGTCGAGGGGTCCAATACCTGAAAGAGCTGGCCAAGTGAAAAGCATGCACATACCTGTCACGCTTCCTGGCTGCTGCCGCCGATCCAATTTAAAGACCGAAACTCCTCAAGCAATCACCCTCAGAGCGCCCATGAACCGCCTTACCTCTTCCATTCCGCTCCATTTGAAGTCCTCCTCTTTTTCTCCAACAAACAGCAGGGTCAGGGGAAAAACAACCTAAGACATGACAGACAGGTGGGACGGAATGAAAGGGATGAGGTTGCCTGATCCCCGATTTGAAGAATTGCGAAACTGGTCTTCAGAATCTGCAGCAGCTGTGGATCTCTCATTCCTGAGCTTTATGTTACATAATTGAGGTCCCTTTTTTTGTTAGCTGGCCAAACAAACATTGTGTTCAGTCATTTCACCATTGatgatgtaaatatatttactaatCCCAAGGTTTATGCATCTGGGGGCCAGATTTGCTCAAATGGCCTAGTCTATAAttagcccccttgcattgcACTGCGTTGTCAAATGAAGAATTCGGATGATTTCGAAGGGAAGTATTTTTGTTCCAAGCTGTTATTTAATCACactttctttttagttttttcatggTTCAAGAaaagctttgtttatttgtacttaGAAAGCATCCCAGGCTGGGAATCGCACAAAAGCATGACCCAATGTCTGATTCTTGCAAAGCACTTGATGTCAGAATTGGCAGCATCTTGTAATActacagatgtatttttcagGGGTTCGGTTGAACAAAACTGCTGGTACCTGCGTTGAAAGAGCTGCAAGTAGGAGAGTCCCGCTGTAAAAGCGTGTATTACTGAATGCATTTGATATGTCTCGAAGAACAAGAACTGACGAAGTTCTCACTCTGGATCTCTCTCTCATCCAATTCCACTTGAAAACACCTTATTTTGTGCTATTAACCTGTATAACAACTGTACCTATCTGTAAATAACTAAATGCTACCATCTTTACAGTAACAGTGTCAAAAATAAGACGCTTCAGTCTACATGAGCTAGGAGGTTTGGTCTCTAAATGGCTTGATCagtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195135 lncRNA upstream 263460 11639686 ~ 11639926 (+) True G154917
TU195134 lncRNA upstream 264612 11638324 ~ 11638774 (+) True G154916
TU195133 lncRNA upstream 265367 11632091 ~ 11638019 (+) True G154915
TU195120 lncRNA upstream 289017 11613670 ~ 11614369 (+) True G154908
TU195080 lncRNA upstream 414872 11486492 ~ 11488514 (+) True G154879
TU195210 lncRNA downstream 797 11906641 ~ 11912100 (+) True G154979
TU195263 lncRNA downstream 64980 11970824 ~ 12207954 (+) True G155017
TU195266 lncRNA downstream 78819 11984663 ~ 11986924 (+) True G155018
TU195305 lncRNA downstream 295892 12201736 ~ 12203472 (+) True G155053
TU195472 lncRNA downstream 541636 12447480 ~ 12447684 (+) True G155182
AMCG00005883 mRNA upstream 78749 11802432 ~ 11824637 (+) True AMCG00005883
AMCG00005864 mRNA upstream 211794 11690821 ~ 11691592 (+) True AMCG00005864
AMCG00005885 mRNA upstream 216611 11682809 ~ 11686775 (+) True AMCG00005885
AMCG00005886 mRNA upstream 293235 11601902 ~ 11610151 (+) True AMCG00005886
AMCG00005866 mRNA upstream 340759 11558449 ~ 11562627 (+) True AMCG00005866
AMCG00005896 mRNA downstream 26340 11932184 ~ 11935207 (+) True AMCG00005896
AMCG00005898 mRNA downstream 30005 11935849 ~ 11938386 (+) True AMCG00005898
AMCG00005897 mRNA downstream 46517 11952361 ~ 11972073 (+) True AMCG00005897
AMCG00005903 mRNA downstream 90980 11996824 ~ 12003499 (+) True AMCG00005903
AMCG00005904 mRNA downstream 107684 12013528 ~ 12017391 (+) True AMCG00005904
TU195111 other upstream 298111 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 578312 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 817375 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 893032 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 987657 10913397 ~ 10915729 (+) True G154636
TU195527 other downstream 785972 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 786916 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 791504 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 800647 12706491 ~ 12707437 (+) False AMCG00005987
TU195534 other downstream 805934 12711778 ~ 12714013 (+) False AMCG00005984

Expression Profile