RNA id: AMCG00005897


Basic Information

Item Value
RNA id AMCG00005897
length 1452
RNA type mRNA
GC content 0.57
exon number 12
gene id AMCG00005897
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11952361 ~ 11972073 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTCGgtgaacagaaaaacagaagaccCGCCATGCAGAGCAGAGCCTTGGGAGGCACCGGGCCGAGAGATGTCATGGTGGACGAGCAGAGTTCTGACCGGAGGGGACCGAGCAGGTCCTCTGGAATCGCAGAGTGTCACTTGCACCCCAACTTCTCCGAGGAGAACTATGACAATGATATCGCTCTGCTCAAGggggtggtggtgggcaTCACCTCCAGCCGTGGCAAGAAGTATGGCAAGCCCAAGAAGCTGGGCATGTACACGGTGGTCTCCCTGTACACCCAGTGGATTGACAGTGTCCTGCAACACTACCAGCTAGAATCCAGTGCAGCAGAAGAAACTACAGTGACAGGATCTAATTTTGAGGTCATGAAGGGAACAGCActtaAAGAGAATGTTTCTCTGAATAAGAACGTGGCCGTGATTCCGTTGCCGTGGAATCAGACGAGTGTGTCAGCGCACACAGAGTGCTCTGTGGCTGGATGGGGGGCAACGGACCCAGAAGGGAAACACAGTTCTAACACTCTGATGGGGggcGACTCCGGGGGACCTCTGGTCTGTGATGGGGTGGCATACGGCATCATCTCCAAAGGCAGCTCTACGTCTGTGGACGACTGGTCAGCAAAGACACTCCCCTACCTTCAGAAGCATGATGTCATCATTGAGTGCCTTCTGACAGCACAAGGGAAATGGAAACTTTCTGACCATTTTGATGATCTGCTGCaagggaaagagaaaggaaCAAACGGCGCCCTGATCATTGGCGGTAGAGCTGTGCTCCCGCACTCCCGGCCCTACATGGCGTCCATCCAGAAGAACGGCACTCACTTCTGCGGGGGCTTCCTGGTGGCCAAGCAGTGGGTGATGACGCCGTGCACTGCTTCACTGAGCCGTGAGTACAGACAGGGGCTGGAGCGTAGGAGCAGAGTTGTGCTGGGGGCCCATTCTCTCAGCAGACCGGAGGGGACCAAGCAGATCTCTGAAATCGCAGAGTGTCACCTGCATCCCCACTTCTCCGAGGAGAACTATGACAATGACATCGCTCTGCTCAAGGTGCAGCGGGGTGGGGGAAACCTCCCTGAGGGGCAGCAGTGCAGCACAGCCGGCTGGGGCTGGATCACCAACTACCACCGACTGCCCATGGTGCTGCAGGAGGTCTCCGTCACGGTCATCAGCCAGCACCTGTGCGGCCGCAGTGATTACTACGGAGACCAGCTCACCAGAAACATGATGTGTGCTGCCACGTGCCCCAGCAACTCGAGGAAGCTCTGCCAGGATGCCTGCAGGgGCGACTCTGGGGGTCCCCTCATTCACAAAGGGGTGGTGGTGGGCATCACCTCCACTGGTGGCAAGAAGTGTGGGAAGCCTAAGAAGCCGGGCGTGTACACGGTGGTCTCCCACTACACCCAGTGGATTGACAGCATCCTGCAACAAAGTAATGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195210 lncRNA upstream 40261 11906641 ~ 11912100 (+) True G154979
TU195135 lncRNA upstream 312435 11639686 ~ 11639926 (+) True G154917
TU195134 lncRNA upstream 313587 11638324 ~ 11638774 (+) True G154916
TU195133 lncRNA upstream 314342 11632091 ~ 11638019 (+) True G154915
TU195120 lncRNA upstream 337992 11613670 ~ 11614369 (+) True G154908
TU195266 lncRNA downstream 12590 11984663 ~ 11986924 (+) True G155018
TU195305 lncRNA downstream 229663 12201736 ~ 12203472 (+) True G155053
TU195472 lncRNA downstream 475407 12447480 ~ 12447684 (+) True G155182
TU195509 lncRNA downstream 573149 12545222 ~ 12585408 (+) True G155207
TU195499 lncRNA downstream 581352 12553425 ~ 12554767 (+) False G155206
AMCG00005898 mRNA upstream 13975 11935849 ~ 11938386 (+) True AMCG00005898
AMCG00005896 mRNA upstream 17154 11932184 ~ 11935207 (+) True AMCG00005896
AMCG00005895 mRNA upstream 46274 11903352 ~ 11906087 (+) True AMCG00005895
AMCG00005883 mRNA upstream 127724 11802432 ~ 11824637 (+) True AMCG00005883
AMCG00005864 mRNA upstream 260769 11690821 ~ 11691592 (+) True AMCG00005864
AMCG00005903 mRNA downstream 24751 11996824 ~ 12003499 (+) True AMCG00005903
AMCG00005904 mRNA downstream 41455 12013528 ~ 12017391 (+) True AMCG00005904
AMCG00005902 mRNA downstream 55608 12027681 ~ 12068052 (+) True AMCG00005902
AMCG00005894 mRNA downstream 175419 12147492 ~ 12165856 (+) True AMCG00005894
AMCG00005892 mRNA downstream 198007 12170080 ~ 12171314 (+) True AMCG00005892
TU195202 other upstream 46517 11903386 ~ 11905844 (+) False AMCG00005895
TU195111 other upstream 347086 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 627287 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 866350 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 942007 11007544 ~ 11010354 (+) True AMCG00005840
TU195527 other downstream 719743 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 720687 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 725275 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 734418 12706491 ~ 12707437 (+) False AMCG00005987
TU195534 other downstream 739705 12711778 ~ 12714013 (+) False AMCG00005984

Expression Profile