RNA id: AMCG00005898


Basic Information

Item Value
RNA id AMCG00005898
length 522
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00005898
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11935849 ~ 11938386 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCTTTGGCTGCTCGGACAGTTATCACACAGCATTTGAACTATGGTCTGGATCTGGTGTGCAGCAACGGGTTAGCCCTGAGCCCGGAGCAGAGCGCAGCTTTGCAGAGCTCTCTGCTGATACAAAAAGCTAATTATCAGTTCAATCGAGTTCAGTTTTAGGTCAAAATAATGTCAAAATAATGGCCTTAAACAGGACTATTTAATCGCACAGGGCTTTTCAGACGACGAAATGGGACATCGGAAGACCCTCTACAGCTTATTGTCCCCCCCAAGGTGTGGCCGAATGTGGCAGTCACCCAATCAGGATTTTCTCAGGAAAAATGATGGGGTTTCGGTTCTGCTTCCAGGATCATGGAGCCTGGGGTTTGAGAACGGCGTGATGGTCCTCAGGAGTTTGCTGTGGCTAGGTTTGACTTTCTACCAGGACCCAATGACACCAGCACATGGATTTGTGTACATGGAAACTGACCTGaagaattttaatttgattgtccTCTGTAGTTTGCTACCTTCACGCTGG

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0035082 axoneme assembly biological_process
GO:0031514 motile cilium cellular_component
GO:0005930 axoneme cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195210 lncRNA upstream 23749 11906641 ~ 11912100 (+) True G154979
TU195135 lncRNA upstream 295923 11639686 ~ 11639926 (+) True G154917
TU195134 lncRNA upstream 297075 11638324 ~ 11638774 (+) True G154916
TU195133 lncRNA upstream 297830 11632091 ~ 11638019 (+) True G154915
TU195120 lncRNA upstream 321480 11613670 ~ 11614369 (+) True G154908
TU195263 lncRNA downstream 32438 11970824 ~ 12207954 (+) True G155017
TU195266 lncRNA downstream 46277 11984663 ~ 11986924 (+) True G155018
TU195305 lncRNA downstream 263350 12201736 ~ 12203472 (+) True G155053
TU195472 lncRNA downstream 509094 12447480 ~ 12447684 (+) True G155182
TU195509 lncRNA downstream 606836 12545222 ~ 12585408 (+) True G155207
AMCG00005896 mRNA upstream 642 11932184 ~ 11935207 (+) True AMCG00005896
AMCG00005895 mRNA upstream 29762 11903352 ~ 11906087 (+) True AMCG00005895
AMCG00005883 mRNA upstream 111212 11802432 ~ 11824637 (+) True AMCG00005883
AMCG00005864 mRNA upstream 244257 11690821 ~ 11691592 (+) True AMCG00005864
AMCG00005885 mRNA upstream 249074 11682809 ~ 11686775 (+) True AMCG00005885
AMCG00005897 mRNA downstream 13975 11952361 ~ 11972073 (+) True AMCG00005897
AMCG00005903 mRNA downstream 58438 11996824 ~ 12003499 (+) True AMCG00005903
AMCG00005904 mRNA downstream 75142 12013528 ~ 12017391 (+) True AMCG00005904
AMCG00005902 mRNA downstream 89295 12027681 ~ 12068052 (+) True AMCG00005902
AMCG00005894 mRNA downstream 209106 12147492 ~ 12165856 (+) True AMCG00005894
TU195202 other upstream 30005 11903386 ~ 11905844 (+) False AMCG00005895
TU195111 other upstream 330574 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 610775 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 849838 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 925495 11007544 ~ 11010354 (+) True AMCG00005840
TU195527 other downstream 753430 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 754374 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 758962 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 768105 12706491 ~ 12707437 (+) False AMCG00005987
TU195534 other downstream 773392 12711778 ~ 12714013 (+) False AMCG00005984

Expression Profile