RNA id: TU195034


Basic Information

Item Value
RNA id TU195034
length 2108
lncRNA type sense_over
GC content 0.42
exon number 3
gene id AMCG00005907
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11406306 ~ 11409672 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAGGAGAAACAAACCCGCCAAGAGAGTGAGTGCAGAAGAGTGAGACCTGAACCCGATAGAGAAGCCGGCTGAAACAtctctgaaacaaacaaacaatgtcgAAGAAACAGATCTACTACTCCGACAAATACACGGACGAGGAGTTCGAGTACAGGCATGTTATGCTGCCGAAGCAGCTTTCCAAACTAGTGCCCACCTCTCATCTGATGTCTGAGGACGAGTGGCGCACCCTGGGTGTCCAGCAGAGCCAGGGCTGGATACATTATATGATCCACAAGCCAGAACCGCACATACTGCTGTTCCGAAGGCCTCTCCCAAAAGAGTGAAAGGCGACGGGAAAGACCCAGACTTGGAACGTTTCTCCTTCAATTCCAGCAGCAAATTCAATAATCTGAACCGAGCGCATGAATGTATGGCTTCATATGTGAGTGTTTTGATTGATATCACGTCAGATTTTGTGGTCCTGTGAAAAGCCCCGAGACGGACATCCCGAAAAAATCTGGCTAATCGctaataatcaaaaataaaacaaaaaactgcggCCCGCACAACTGAGCGAGTGTAGAAGAAGGAGAAGCCACTCCCTCCTGGGTTGGTAGGAAAGTTCCTCGGCTGTAGTAATGAACCTCAGATCTGGAAAGCAGGACTAAACGCACTGCGTCTCATTCAGAGAAGTCCTTGGGGTATTCTGGTCTCTCCCAAAGCATGACTTCCTTTTCTCTCAAGATCTTTTTGATTCCGAATGTTATCCTTTCAGTTAAACTATACTGTGGAGGGGGATGAGAGAAACCGGCCTACAGAAAAATGATCCAGTCACAAATCTTAAAAGTTATAAAAAGAGTTTGCAAAATGTGGTTGGTTGAtggctgcttaaaaaaaaatactggttCAGTTTTCTGACCCACCAGCTTGTTTTCTGTCTAGTGAGGAGTATATTCGATGAGGGTGGCGCTTGGATCTGTGGCTGAGGCAgtttgtttaaaacacattttatttacaagttTCTTAGGAAAACAGTCGAGGGATCCAGGATCTAGCCTATACAGAGTTAATCTACAGACTCGTGTCCCTGACAGCatctctcttgctctttctGCGAAGAAAAATTAGAATGTCACATTTGAAGAAGAAATTGCTCCAaacatatttacttatttgtttcacatttaatttatcgATAATGAACGTACACAATTGTGGCTTCACACCCATGTGGTACTTGCAAAGGTTAAAAAGCAAGCAAGCTTTCACAGGCTAGATTTGATAGCTGCACTCAGTAGTTGGTGACCGCACATGTTTACTGTTCTTCACAGTGGCTCGAGTGCTGTCAGTGACAGGTTTGTAGATTGACTCTTCAGGCTCTACTCTGCAGATGCTTTGAACAGTGCAGTGTGGCAAACAGATGCTGTAGATGTGATGGAGACTCTAGGCCGGTTGCAGCACTTTGACATTTTAAGTAGACTACTAAAAGGTGTGATTTATAGTGGAAATCATCAATCCTGTAGTtcagggattcccaaaccggtcctggaggaccccctgtcccaactgagatcttaattgcttaatttaatccttaattgaaggaacaatgcaatataaggctcaGTTATGTAATAAGGAGCTCGGTTggcacaaaaaacagcaggacagggcagggggtcccccaggatggtttgggaatccctgctgtAGTTAAAAGCTTGTAGTCTTGTAAAATAAGCCCTATTTCACTTGGTTTCTTCTTATTCATACTTATTGCATACGTGTGTTCTGTGTATACCTTTTCTTTTACTTGTTCCATTtcatgaatgtgtttgtttttgttcctccaCAAAAAGTCTGTCTTTAGAGCTGCATTTCTGAAGTAGTTTCAACCCAGATATTTCCagtaggtatttatttattttagtcactAACAGCTCCTTACTTGATGCACTACGTTTAACTCGCCTGGTGTTGACATCTTGTtcagttatttgtgttttttgtttttgtaacccttgtatatattgtaatgccAAATGGCTGCTTTATTGCTTTGTTGATTTCCTTGTTGTATTCAATATAAACTGTTGTAGCCAAACCTTTTGTGGTTGATTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195024 lncRNA upstream 27071 11378780 ~ 11379289 (+) True G154831
TU195007 lncRNA upstream 35448 11370424 ~ 11370912 (+) True G154816
TU195006 lncRNA upstream 44127 11362005 ~ 11362233 (+) True G154815
TU194983 lncRNA upstream 44590 11319964 ~ 11361770 (+) False G154798
TU194957 lncRNA upstream 226123 11174395 ~ 11180237 (+) True G154775
TU195045 lncRNA downstream 6633 11416065 ~ 11416329 (+) True G154847
TU195063 lncRNA downstream 40048 11449480 ~ 11465625 (+) True G154863
TU195080 lncRNA downstream 77060 11486492 ~ 11488514 (+) True G154879
TU195120 lncRNA downstream 204238 11613670 ~ 11614369 (+) True G154908
TU195133 lncRNA downstream 222659 11632091 ~ 11638019 (+) True G154915
AMCG00005874 mRNA upstream 62756 11339604 ~ 11343604 (+) True AMCG00005874
AMCG00005873 mRNA upstream 75239 11324831 ~ 11331121 (+) True AMCG00005873
AMCG00005853 mRNA upstream 162562 11242839 ~ 11243798 (+) True AMCG00005853
AMCG00005854 mRNA upstream 199771 11205387 ~ 11206589 (+) True AMCG00005854
AMCG00005816 mRNA upstream 234286 11171014 ~ 11172074 (+) True AMCG00005816
AMCG00005906 mRNA downstream 48066 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005908 mRNA downstream 68263 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005865 mRNA downstream 85709 11495141 ~ 11507437 (+) True AMCG00005865
AMCG00005866 mRNA downstream 149017 11558449 ~ 11562627 (+) True AMCG00005866
AMCG00005886 mRNA downstream 192470 11601902 ~ 11610151 (+) True AMCG00005886
TU194985 other upstream 81286 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 320349 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 396006 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 490631 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 676151 10722332 ~ 10730209 (+) False AMCG00005834
TU195111 other downstream 192995 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 493954 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1282384 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1283328 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1287916 12697348 ~ 12698530 (+) False AMCG00005987

Expression Profile