RNA id: AMCG00005909


Basic Information

Item Value
RNA id AMCG00005909
length 1208
RNA type mRNA
GC content 0.68
exon number 3
gene id AMCG00005909
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11450086 ~ 11451494 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAATAAGTGCTTAACAGAGGGGGGGATGTTATCTTGCTCACCTTCCTTAATCTCTTTTCCACTGGTGTTGGTAGCTGGCACCCCCGCAGGAGAGTGACCGGGCCGGGAGGGGATCGTACAAGTGAGGATGGGTGGCGACAGGAGACCCAAAAGGAGACGGTGCCCCAGGGCTCGTGCCTGTTGATGTGCCCGGCCGCCGAGCTGCGGGAGCGGGAGGCCCAGCGGCGGCTCCATCGCTTCGAGGTGCTGCCCGGCACTGAGCGCCAGCGCCTGCCCCGTGCTGACCCCACCCGCACCGTCAAAGAGTACTCCCGCCCAGCCGCTGGCAAGGACTGCACCCGGCCTGCCGACCTCCGGCCCCCGGCTGTGCTGTACCGCACCGTCTGCTACCTCGTGGACAACATCGCCTCCTCGGCCGGCCTGCAGCCCTGGAACGAGGTGTACGACTTCGTGTTCGACCGGCTGCGCAGCGTGCGGCAGGACATGGTGATCCAGCGCGTGGGTGGCGAGGCCTGCGTGTCTGTGCTGGAGCGGACCGTGCGCTTCCTGCTGTACGCCGAGTACCGGCTGAGCGGGGAGCCCCTGCGCTGCTTCGACCCCCAGATCAACCGGGCGCACCTGCGGGAGAGCCTGGCCTGGCTGCTGGGCTGCTACCAGCTGGAGCCCGGCCTGCACAGCAACCAGGAGGAGTTCGAGGCGCTCTGTCTGCTCTACAACTTGGGCTCCCTTGACGCCCTGCGCcacgccctatgcctgccggagAAGCTGCGGGGCTCGCCGGGGGTGCGGCTGGCCTTAGCAGTGAACCGGGCCTTCCTGGAGCGGAACCCGGTGCGCCTGCTCCGCCTGGCCCGGCCCCTGCCCTTCCTGCACAGCTGTGCCCTGCACCCCCACCTGACCCGGTGCCGCCGGGACCTGCTGCTGCTATACAGCCATGGCCTCAGCAGCCGCAACGGCCGCTTCCCCCTGCCCAGGCTGGCGGAGCTGCTGGGCCTGGGCGGGGGCTCTCAGGCGGCTGAACTGTGCCAGGCCCACGGGGTGGAGGTGAGCGGAGACTGGGCGGTGTTCAACAAGGGATCCTTCAAGGAGGCCGAGAGGCAGCCGGGCGGCGGGAGCTCCTACGAGCTGGTGGGCTGCAAGCAAGGGGACCGCTCCCTCGCCAGCATTATTCACGGAGAGCCTTAACccaacgcacacacacacacac

Function

GO: NA

KEGG:

id description
K16734 SAC3D1, SHD1; SAC3 domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195046 lncRNA downstream 33698 11415817 ~ 11416388 (-) True G154848
TU195025 lncRNA downstream 73881 11374506 ~ 11376205 (-) False AMCG00005875
TU195009 lncRNA downstream 130102 11309698 ~ 11319984 (-) True G154817
TU194973 lncRNA downstream 165688 11284128 ~ 11284398 (-) True G154791
TU194964 lncRNA downstream 241910 11207031 ~ 11208176 (-) True G154782
TU195118 lncRNA upstream 117779 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA upstream 158342 11609836 ~ 11613611 (-) True G154906
TU195122 lncRNA upstream 162180 11613674 ~ 11614383 (-) True G154909
TU195177 lncRNA upstream 238246 11689740 ~ 11690048 (-) True G154954
TU195245 lncRNA upstream 480618 11932112 ~ 11932947 (-) True G155003
AMCG00005913 mRNA downstream 1503 11417894 ~ 11448583 (-) True AMCG00005913
AMCG00005914 mRNA downstream 37897 11409667 ~ 11412189 (-) True AMCG00005914
AMCG00005910 mRNA downstream 58077 11379562 ~ 11392009 (-) True AMCG00005910
AMCG00005875 mRNA downstream 73548 11374475 ~ 11376538 (-) True AMCG00005875
AMCG00005881 mRNA downstream 77770 11370260 ~ 11372316 (-) True AMCG00005881
AMCG00005911 mRNA upstream 2254 11453748 ~ 11457225 (-) True AMCG00005911
AMCG00005912 mRNA upstream 12116 11463610 ~ 11469760 (-) True AMCG00005912
AMCG00005890 mRNA upstream 163898 11615392 ~ 11616813 (-) True AMCG00005890
AMCG00005887 mRNA upstream 170934 11622428 ~ 11627932 (-) True AMCG00005887
AMCG00005888 mRNA upstream 185644 11637138 ~ 11649322 (-) True AMCG00005888
TU195020 other downstream 95453 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 110972 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 125019 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 537341 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 539654 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 1220158 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1392284 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2716596 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2885397 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 3057739 14509233 ~ 14509614 (-) True G155770

Expression Profile