RNA id: AMCG00005910


Basic Information

Item Value
RNA id AMCG00005910
length 3837
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00005910
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11379562 ~ 11392009 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCTTAAGCCCAAGTACGGCCGCTTTCGCAACGACTCTGTGACCTCCTCTGATGACCTGATGCAAAGCTTAGCCATGAGCGGCAAAGTGGTCGCCACGCCGGTCTCCTCTGCCTCCCCTGCCGCGTCCTCGGGGGGGCCCTTCCTGCCGCCGCTGCCGCCACTGCCACTGCCCCCGCTCGAGCCCCTGGTCCGCCACCCCTGCCCCACCGCCGCTGCCGCCCGCCCCGCCGCCCTGCCGGAGTCGCCTTGCCCTGACGGGGACCAGGATGGCACCACCACCTTCTGCATGCTGATCCCCAAGATGCCCCAGTGGAAGTTCTCCAACGCCTCCTCCTTCCTCAGCCGCAGcccctccagctccagctccagctcggGCAGCAGCAACAAGGACAGCGGCGGGGGAAAGGGCTCCGGGGGCACCGTGCCCATTGCCGTTGCTGGTCACCCGGTCAGTGGCCCCGTGGCCAGCTTGGCCGCCGTCCTGAACTCCTGTGACCCCATCTGCGTCACCCCTTGTTCCCTGCAGGCCGTCAACAGGCTGCGCGGGGTTACCACCACTGCCgccgccaccaccaccagcacTACCAACGGAGGCCCCACCGCAAGCCCCGGGTCGGGCGCCACTGCGGGCATGAGCCGGAGGAACAGGGTGGAGGGCATGAGGCTGGGTGGCGAGGACTTCACCAACAAGGGCAGCTTCATCCACAAGCCCTCACAGGGCTGGCTGCACACAGACAAGAAGATCACAGGGCCAGGAGCCTCCTACATCGTCCGGTACATGGGCTGCATCGAGGTCCTAAAATCGATGAGGTCACTGGACTTCAACACTCGCACCCAGGTAACCAGggAAGCCATCAACAGGCTGTATGAGGCTGTGCCTGGGGTGAAGGGTGCATGGAAGAAGAAGGTGATGAACAAAGCCCTGCACTCCATCATGGGAAAGAGTAACCTGCGCTTCGCTGGCATGAGCATCGCCGTCAACATCTCCATCGAGGGGCTGAACCTCGTGATGCCCACCACCCGCCAGGATACTCCGGACTACGTTGCATATGTCGCCAAGGACCCTGTCAACCAGAGAGCTTGCCACATCCTGGAGTGCTGTGATGGCCTGGCCCAGAGTGTGATCAGCACCATCGGACAGGCCTTCGAGCTGCAGTTCAAACAGTACCTGCACAGCCCCCCCAAGGCCATCACCACCCTCGAGAGGAATATCCGGACGGAGGAGTCGGCATGGGGCGAGGACGAAGAAGCCTCTGAGCACGACTACTACAACAGCATTCCAGGGAAGGAACCTCCTGTGGGGGGAGTCGTGGACTCTAGACTGAGGCCTGCCGGAGCCCTGCTGGGCCACATCCACGCCCAGACCCACAGCAGCACCAAAACGGCACAGACGGGTTCCCCTGCTCGGACGGAGgggaccccccacccccacggGCAGCAGCTGTGCTACGAAATCCACTGGGACACCGAGAGCACCGGCAGCTGCGGGCTGACGTCAGATGGGTACCTGCGTGCGGATGGGCACCCCCGTGGTGGCTGCGACTACGAGGAGCACCTGTACGTGAACACGCAGAGCCTGGAGAACTGGGAGGGCGAGAGGGGCCCCGGGGGGCCACCAGACAGCCCCAAGAAAGATCTGTTCGACATGAGGCCCTTTGAGGATGCTCTGAAGCTGCATGAGGCGGGGGGCACTGGAGGCCAGGCGCTGGGGATGAGCCCCCCGCTGCTGGGGGACCAGTGGCCCAGTCCGCCCCGCCGCCGGGCCCCCATTGCGCCCACAGAGGAGCAGCTGCGGAGGGAGGCCTGGTACCACGGGCGCATGAGCCGGCGCGACGCCGAGAGGCTGCTGGTGATGGACGGCGACTTCCTGGTGCGGGACAGCGTCACCAACCCCGGCCAGTATGTACGCACCAAAGACATGCTGTTCGAGAGCATCAGCCACCTGATCAACTACCACCTGCAGAACCAGCTGCCCATCGTGGCGGCCGAGAGCGAGCTGCACCTCAAACAGGTGGTGCGCAGAAAACAGTGACCCCGACGCCACCCCAgtctgcctgcctccctcaAGGCATGTGGAGGAGAAAGGAAGCTTGACCTTCACTGGACAATCCACTGCTACAACACTCTGAAGGCACCGGGTTTTGTGTTGGGTTTTCTTGTGCGTTTTCTAGAATATAATCAATGTGTCGTTCAGTAATGGCACCTCATTGCTGGCCACACCCCACTCTTCACCGAAAACAAGGTGCGGGACTTGGGAGTTCAAAAGTCGGAGAACtgctattttcttttgttttctttattgagGGGGTGTGTTAGAACAGTAATGGTGCAGCACAAGGACAGAGGTCAGAGTTCAAAGTTCACCTCTACCTAACTGCAGTAGCAATCCATCTGTCCGCCCAGTGGAACCGTGTCCGCAGAAACATGTAATTTTGGCCAAAGAAAATGGGGATTTCACACTGTTTCCCACAGCTTCATCCCACTTCAACAGCCAGAGGAATGTAGAGAGGGGGTGGTCTCTGTAGTTCTGGAATCGGAGGGGAGATACGGAGCACAGAACTGAACACAtaggcctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagtgagtgagtgacaggCTACCACAGCTGCTTCTGAGGATCCTATTTATTGCAACCGACTTATGAAGTGATTGTAATGTCTGTTTCCTTATAATCTGTGTTCTAaatcaggttttgttttttgtctttactCTGGAGGTAAGCACTGCCCCCCCTTGTGGTGGGAATGAGATGTACACAATGTTCAAACACTGCAGTTATTTTCCGTGTATTCCTTatcaaaatcataaaacaaaaaaaactaaaaacattttataccttcattaagttttattttgtgtgttctcTTTcgcaaccccccaccccatctctGGTTTGAGGCTGCCAGTTTATATTACAACTTGTGAGAAGTCTCTGATGCTGCTATAGATAATTGTTATGCAATACTATTCTTGTAACCACAATAATACTGCAGTTTTCcagtctttttttcctccccaggTTTTACAGACACATCCTCAGTGTCTGGTTGGGGCCGTGGCTTGTCTTTAATGACTGAATTGATTGGCGGGGCATTAGGGTTGGAAGTCAGTTGCCCTATTTTATTCCAGATCTTCATAGGTTGCTAATGTAAGAGTACCTGTTACAAAAGGCCCTGCCTTTGGACATTTTGACTGTATTTCAGTCGTGCCAAACACAGGGCCCTACCTACAGACTCAGCCTTTGAAGACTGGCCGCCCACATCCCCTGGCCTCTGCAGGCCCCTTTCATGTGAAGTGTCAGGGATCGTGCTctgacccacacacacacacacgtgggTGGAGCACAGCTGCAGGACTTCCAGGGATGATACAGCTTGTGCGGCCACGGCATTGAGCGAGAGTTGATTACGAACTCTGgttattttaaaggtttttcCAGTTTAATTCGCTAGCGTTGCAAAGCCTGGGtctaattaatttgtatatggAAAGAAAAGCTTCCTGCACACCACATACTGTTGAATAGTTCTGCTTCACTGGgctgtggattttattttattctccctCCACTAATGGTCTGTTATCGCAATGCACTGGGGCTGGCTTAACTGTAGGGGGCGCTGCACAGTCAGGACCAGTGGGGAACGGGCTGCCCTCTGGCAGCActgatgtgtgttgtgtgcgtcTCTCACAGCGACTGCCTGGGCTTTGCGCAGGACGTTCTGGGACATGCTTCTCTTTTGAATGAAAAACGCAATTtatacaaactaaataaatctgAAAGAAAGAACATGTGTGAGG

Function

GO: NA

KEGG:

id description
K17447 SHC2; SHC-transforming protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195025 lncRNA downstream 3357 11374506 ~ 11376205 (-) False AMCG00005875
TU195009 lncRNA downstream 59578 11309698 ~ 11319984 (-) True G154817
TU194973 lncRNA downstream 95164 11284128 ~ 11284398 (-) True G154791
TU194964 lncRNA downstream 171386 11207031 ~ 11208176 (-) True G154782
TU194918 lncRNA downstream 301361 11001674 ~ 11078201 (-) True G154745
TU195046 lncRNA upstream 23808 11415817 ~ 11416388 (-) True G154848
TU195118 lncRNA upstream 177264 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA upstream 217827 11609836 ~ 11613611 (-) True G154906
TU195122 lncRNA upstream 221665 11613674 ~ 11614383 (-) True G154909
TU195177 lncRNA upstream 297731 11689740 ~ 11690048 (-) True G154954
AMCG00005875 mRNA downstream 3024 11374475 ~ 11376538 (-) True AMCG00005875
AMCG00005881 mRNA downstream 7246 11370260 ~ 11372316 (-) True AMCG00005881
AMCG00005880 mRNA downstream 11645 11361157 ~ 11367917 (-) True AMCG00005880
AMCG00005879 mRNA downstream 18688 11352170 ~ 11360874 (-) True AMCG00005879
AMCG00005877 mRNA downstream 40427 11336595 ~ 11339135 (-) True AMCG00005877
AMCG00005914 mRNA upstream 17658 11409667 ~ 11412189 (-) True AMCG00005914
AMCG00005913 mRNA upstream 25885 11417894 ~ 11448583 (-) True AMCG00005913
AMCG00005909 mRNA upstream 58077 11450086 ~ 11451494 (-) True AMCG00005909
AMCG00005911 mRNA upstream 61739 11453748 ~ 11457225 (-) True AMCG00005911
AMCG00005912 mRNA upstream 71601 11463610 ~ 11469760 (-) True AMCG00005912
TU195020 other downstream 24929 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 40448 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 54495 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 466817 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 469130 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 1279643 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1451769 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2776081 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2944882 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 3117224 14509233 ~ 14509614 (-) True G155770

Expression Profile