RNA id: AMCG00005912


Basic Information

Item Value
RNA id AMCG00005912
length 1098
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00005912
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11463610 ~ 11469760 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAGTGGAAAAAACTCTTCTCTCCACCCCCCGCAGAACTGGCGGCGATCTTCCCGCAGGACCCCACGCTGCGCATCGGCTCCTCGCTGACGGCCACCTGCTCCCTCAGCCCCGAGCTGGGCCTGGATGTCCGCACACTCTTCTGGACGCTGAACGGGAAGCGGTTGCCGAGCAGCAGCTACGCGGTCCTGAGCCAGACGGCGCTGAGCGTCACGCTGCCCCGGCTGAACGGCTCGCGGCAGCAGTCCGGGGACAACCTGGTGTGCCACAACAGCGAGGGCCACATCCTGGCCGGCTCCTGCGTCTACGTCGGCATGCCGCCACAGAAGCCTGTGAATCTCACCTGCTGGTCCAGAAACACCAAAGATCTGACCTGCAAGTGGACGCCTGGCAGCCAGGGGGAGACCTTCCTCCGGACCAAGTACACCCTCAAATACAAACTCAGGTGGTACGGCAGGGAGAAGGAATGCGAGGACTACAACCTGGGCGAGCCGTACTCCTGCTACATCCCCCGCGACCTCGCCCTCTTCACGCCCTACGAGATCTGGGTGGAGGCGTCCAATCAGCTGGGGGCGGCCAGCTCTGACATCATCACCCTGGACATCCTGGATGTGGTGACCACGGACCCCCCCTCGGATGTCCACGTGAGCCGCGTCGGGGAGCTAGAGGACCAGCTGAGCGTGCGCTGGGGCACCCCCCCCGCCCTCAAGGACTTCCTCTTCCAGGCCAAGTACCAGATCCGCTACAGACTGGAGGACAGCAGAGAGTGGAAGGTGCGTTGCAACCCAGTGGGCATCTACGGCTCCAGGAAGGCAGGAATCTGGAGTGACTGGAGTAATCCCACCGCTGCCTCCACACCACAGAGTGAGCGGCTGGCAAGCGGCTCGTGCGACCCGAAGTCTGGGGAGCAGAACTCCACGCTGCGGCGCGAGCTCAAGCAATTCTTCGGCTGGGTACGGAAACACGCCTACGGCTGCACCGGCATGAACATCAAGCTGTACGACCAGTGGCGCGTGTGGCTGCAGAAATCGCACAAAGCTCGCAACCAGGTAGGTAAGGAGCCTTTTCTTCTGCTTCTACAGTTTAATTCATTAtga

Function

GO: NA

KEGG:

id description
K24481 CRLF1; cytokine receptor-like factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195046 lncRNA downstream 47222 11415817 ~ 11416388 (-) True G154848
TU195025 lncRNA downstream 87405 11374506 ~ 11376205 (-) False AMCG00005875
TU195009 lncRNA downstream 143626 11309698 ~ 11319984 (-) True G154817
TU194973 lncRNA downstream 179212 11284128 ~ 11284398 (-) True G154791
TU194964 lncRNA downstream 255434 11207031 ~ 11208176 (-) True G154782
TU195118 lncRNA upstream 99513 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA upstream 140076 11609836 ~ 11613611 (-) True G154906
TU195122 lncRNA upstream 143914 11613674 ~ 11614383 (-) True G154909
TU195177 lncRNA upstream 219980 11689740 ~ 11690048 (-) True G154954
TU195245 lncRNA upstream 462352 11932112 ~ 11932947 (-) True G155003
AMCG00005911 mRNA downstream 6385 11453748 ~ 11457225 (-) True AMCG00005911
AMCG00005909 mRNA downstream 12116 11450086 ~ 11451494 (-) True AMCG00005909
AMCG00005913 mRNA downstream 15027 11417894 ~ 11448583 (-) True AMCG00005913
AMCG00005914 mRNA downstream 51421 11409667 ~ 11412189 (-) True AMCG00005914
AMCG00005910 mRNA downstream 71601 11379562 ~ 11392009 (-) True AMCG00005910
AMCG00005890 mRNA upstream 145632 11615392 ~ 11616813 (-) True AMCG00005890
AMCG00005887 mRNA upstream 152668 11622428 ~ 11627932 (-) True AMCG00005887
AMCG00005888 mRNA upstream 167378 11637138 ~ 11649322 (-) True AMCG00005888
AMCG00005891 mRNA upstream 200593 11670353 ~ 11674352 (-) True AMCG00005891
AMCG00005889 mRNA upstream 205375 11675135 ~ 11680822 (-) True AMCG00005889
TU195020 other downstream 108977 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 124496 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 138543 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 550865 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 553178 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 1201892 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1374018 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2698330 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2867131 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 3039473 14509233 ~ 14509614 (-) True G155770

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031383 False 2496 mRNA 0.48 8 NC_007113.7 41876595 ~ 41920632 (+)
grasscarp (Ctenopharyngodon idella) CI01000190_00103167_00113652.mRNA True 1319 mRNA 0.56 7 CI01000190 103143 ~ 113652 (-)