RNA id: AMCG00005919


Basic Information

Item Value
RNA id AMCG00005919
length 1164
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00005919
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12325100 ~ 12326263 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAATCCTCCACTCTCTTAATTCTCCCAGCTCCTGCCCGGAGACCTACTCTTGGACCAATGGCAACGTGATCCTGGAGCACTACAACTACACGGGCCGCCTGGAGAACCGGCACAGAGACAACCGGAGCTTCAGCGGGGTCAAGGTGGCCTTCACCTTCATCAGCACCTGCATCATCCTGGAGAACCTGATCGTGCTGCTGGCCGTCCTGGTCCACCTCCGCTTCCGCAGCTGGGTCTACATCTGCATCGTCAACATCACCCTGAGCGACCTGCTGGCCGGCGTCGCCTACGTGGTCAACCTGTTCCTGTCCGGGAGGATGACCTTCCAGCTGACTCCCAATGTGTGGCTCTTCAGGGAGGGCGTGCTGTTCGTGGCCTTGGCAGCGTCCATCTTCAGCCTGCTGCTGACGGCGGTTGAGCGCTATGTCACCATGATGAACCCCACGCTGTACAAATCCACCAGCAAGTCCTGCCGGGTCTACACTCTAGCGGCCCTCTGCTGGGTGGCTGCCTTCATCATCGGCTTCCTCCCGCTGCTGGGCTGGAACTGCCTCTGCAATCTGGAGAACTGCTCCACCCTCCTCCCGCTCTACTCCAAGAGCTACATCCTCTTCTGCGTGGTCATGTTCAGCCTCATCCTTGCCGGCATCTGGTTCTTGTACTACTCCATCTACCGCCACGTCAAGACCAGCACAGAGAAGAGCTCCACGCGCAGCCGGACGAAGTCCTTCCGGCTCCTCAAGACCGTGGTGCTCATCGTGGGGGCTTTTGTCGTCTGCTGGGGCCCCCTGTTCTGCCTCCTACTCATGGACGCCTTCTGCAGTTCAGCTAAGTGCAGCCAGCTCTACAGCATGGACTGGCCCATCGCCCTGGCGGTCCTCAACTCAGCCATCAACCCCATCATCTACTCCTTCGGCAGCATGGATGTGCGCAAGGCCATCGTGAACatcctgtgctgctgctgtttcaaGACAGGCCTGTGCGATATCGCCAGCATCATGTCCGTCGAGACAGGGAACTCCTCCGAGAGCTCCCTGAGACACAATAGCATCCGGAACAGTTTCCGCAGAGCCTCGAGTCTCAGCCCCACACCCTCCACCAAAACCAAGAAGATCCGCCTCAGTTCCACCACCTCTTGTCTGTCCGTGTCGAGCTGTTAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04293 S1PR4, EDG6; sphingosine 1-phosphate receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195331 lncRNA downstream 198972 12125161 ~ 12126128 (-) True G155073
TU195312 lncRNA downstream 301428 12003140 ~ 12023672 (-) True G155058
TU195313 lncRNA downstream 307734 12007468 ~ 12017366 (-) True G155059
TU195245 lncRNA downstream 392153 11932112 ~ 11932947 (-) True G155003
TU195177 lncRNA downstream 635052 11689740 ~ 11690048 (-) True G154954
TU195473 lncRNA upstream 121257 12447520 ~ 12447719 (-) True G155183
TU195546 lncRNA upstream 279460 12605723 ~ 12611445 (-) True G155235
TU195581 lncRNA upstream 369436 12695699 ~ 12696319 (-) False AMCG00005992
TU195584 lncRNA upstream 375874 12702137 ~ 12702641 (-) False AMCG00005992
TU195586 lncRNA upstream 380195 12706458 ~ 12706966 (-) False AMCG00005992
AMCG00005961 mRNA downstream 44304 12267085 ~ 12280796 (-) True AMCG00005961
AMCG00005959 mRNA downstream 78866 12239333 ~ 12246234 (-) True AMCG00005959
AMCG00005960 mRNA downstream 112729 12194580 ~ 12212371 (-) True AMCG00005960
AMCG00005893 mRNA downstream 205147 12087043 ~ 12119953 (-) True AMCG00005893
AMCG00005905 mRNA downstream 331369 11984663 ~ 11993731 (-) True AMCG00005905
AMCG00005918 mRNA upstream 9054 12335317 ~ 12340498 (-) True AMCG00005918
AMCG00005917 mRNA upstream 22982 12349245 ~ 12362876 (-) True AMCG00005917
AMCG00005916 mRNA upstream 39469 12365732 ~ 12410193 (-) True AMCG00005916
AMCG00005923 mRNA upstream 302453 12628716 ~ 12642191 (-) True AMCG00005923
AMCG00005988 mRNA upstream 336089 12662352 ~ 12665106 (-) True AMCG00005988
TU195020 other downstream 970467 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 985986 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 1000033 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 1412355 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 1414668 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 345389 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 517515 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 1841827 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2010628 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 2182970 14509233 ~ 14509614 (-) True G155770

Expression Profile