RNA id: AMCG00005925


Basic Information

Item Value
RNA id AMCG00005925
length 2474
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00005925
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13097069 ~ 13107823 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACACTATAACTGCAGTTTTGTAGCTACAAACTGGCGCAACTTGCCGGGGGGAAGAGAGTCCGGAATACAGAATCGCACCACAATGCAAGTTTTAATTGAAGCACAGTAAACTCAGCGTCATTTGCTCTGTCTTGTCCAGTTGGCAGTGTTGGGTAATCCAACGTTTGGTTCCTCTGAGTGCTAAGGAAGCAGCTGAGGAAGATGAAGGTGCCTCAGGAAATCTGCGTGTTTCTCCTGTCCCTGTCATCCCTGGGGGTCATTTATGCCGTGAACAACATGCCATCTCTCCAGGATCCTGTGTCTATCCTGGTCGTCGGCGCCGTTGTGCTGGCGGCCATGTTTGTCATGGTTTATTATGGAGTCCGCACCAATCCACCCCAAGACCCCCTCTTCTACGTGTTCGCCGTGTTCTCCTTCACCTGCGTCATCGACCTGGTCATCGCGTTGGAGGAGGACGACTACGTGTCTGGGTTCATGGAGTTTTACATGAAGGAGGGGGAGCCGTATCTGCGCACAGCCTTTGGAATCTTGATGTGCTACTGGGACGGCACGGTGCACTTCGCCCTCTATCTCCTCATGGTGCGGAGGTTGGCCAACAAGCAACACTACCGCAGCGTGGGGCTGTTCTGGGTGGGCTCCCTCCTGATCAACATGATAGTTTTCCTGCCGGGCAACGTCATCGGGAAATACGGCTCAGACATCCGCCCGGCCTTCCTGCTCAACTTGCCCTACATCTTCGTGCCGATATGGGCGGCCATCACGCTGTTCCACAGGCCCAGAGAACTGCCCGTTGTGCCCGCTGACAAGgtcgaGTCTGAGCAGAAGAAATGGCTGTGGCAGCGCCCCGTTGACTCGGTGCTGCTGATCTTCCTGCTGGGTGCCATGGTCTTCATCCTGTTCAGGGGCTTGGTTGTCCTCGAGTGTCCTCTGAACGCTTGCTTCCTCTACATCTATCAGTACGAGCCCTACCTGAAGGACCCAGTGGCTTACCCCAAAGTCCTGATGCTCCTGTACATGTTCTACGGCCTGCCCCTGCTGGCTGCGTTCACCTACGGGCTGGTGAAGCCGGGCTGCACCTGGATGCTGGACTGGACCCTGTTCTTCGCAGGAGGAGTAGCTCAGGCCCAGTGGTCCCACATCGGGGGGTCCCTGCATCCCCGGACCCCCTTCACGTACCGAGTTCCCGAGGACACCTGGTGGCCCGTGCTGCTCTTGAACCTCGCCCTGGCTCTGGGGCCCCAACTTCTCGCCCTGCGCTGCCACAGTTCCCCCGAGTTCTTCCTGAAGACCGTGCCCCCCGGCCAGGCCAACCAGGAGAAGAAACGTAACTGACAGCACTCTCCCCCCCGCCCGCCCACGGCCACCCACTGACACTGTCATGCAGATTCACACCCCCACTGTGCTAGGCTGTGCCGAGACCCAACTGAAGCCTCCTGCACTGACCCGGGCGACTGCAAGTGACTGTAGACTTGGGACGTCCCTCTGGATCGAGACTACAGGAACTAGAATTGCTGCTGGAACTAGAATCGCTGCAACTATACTAACCCTCCCCCTTCCCCAGCCGAGATGAATTCACTTTCACAATCTGACTGCAGCGACCCTCTGGACTTTGAAACGGCACTGATGCAACACGCCTAAGAATCTGGACTGTGGAACTGAGATTACTATAACAACATCACCTCGGGACACAGACTGGCATTAATCAGGGCAGCAGAGCCAATCCAAGCTTCTCATCACAGAATGAATACGGCACAGGCAATCTCGAAGCCTGCTTACAGAGTTATCGTGGCACTGTTCCTAGAGTTCATAAACCAAATGCCACAGCAGGCTGGCTGAGCGCAGAatggagacacacacaaaaaagacaggGCTGTGCAAACTGGATGTCAGCAAGGATCACGGATCGCCAGCACATTTTTTCTCTGTTATCtgtgtcttatgtttcttttatACAGAAACTGTTTACGGATTCATTTGAAGTTTTGCATGTTCTGTGTGAATGTAACTCCTGACCTGTCCAATCCCTCGCTCCTGTGACCCAGTGATAGATTTGTGTGAAAGGGCTTTTCTGCATTCGCCGGCCCTTGAGAAAATTACAGTCCATTAACCACTACCCTGCAGGGGAAACgttgttttgaatttgtgaGGCACATAAAAGAAACTCCTTTTCACTGCCCGGCTGAACCAGTGCTTCCTTTAGAGAGCGAGCCTCCCTTTGAACCCATATGAGGTGCATGGCCGAGTTTCAGACAGGCTCAGAGCCCCGTCTGGGGTTTTAGAACTCACACTTTCCCCGCAACGTGTTCTCGTCGCGGCCTGGGACCCGCAGTGAGGTTATTTCGAAGAGCTTGGTGTGCAGTCTGTGGCTGCAGGCTGTGGGGATGCAGCAAAGCAATTCACACTTAGTTGGCggcatctcattaaaatacgcCCACTGTTACACTGAGAGCACAAgtgtcacaaaaacaaaac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195708 lncRNA upstream 46875 13049834 ~ 13050194 (+) True G155362
TU195706 lncRNA upstream 48903 13047964 ~ 13048166 (+) True G155360
TU195705 lncRNA upstream 49174 13047575 ~ 13047895 (+) True G155359
TU195703 lncRNA upstream 51033 13045150 ~ 13046036 (+) True G155358
TU195702 lncRNA upstream 52510 13044269 ~ 13044559 (+) True G155357
TU195768 lncRNA downstream 112838 13220661 ~ 13241499 (+) True G155412
TU195786 lncRNA downstream 165784 13273607 ~ 13274658 (+) True G155427
TU195814 lncRNA downstream 273958 13381781 ~ 13386048 (+) True G155452
TU195853 lncRNA downstream 383118 13490941 ~ 13563786 (+) True G155480
TU195854 lncRNA downstream 420531 13528354 ~ 13672034 (+) False G155481
AMCG00005964 mRNA upstream 63661 13028579 ~ 13033408 (+) True AMCG00005964
AMCG00005963 mRNA upstream 76775 12995584 ~ 13020294 (+) True AMCG00005963
AMCG00005965 mRNA upstream 101589 12969874 ~ 12995480 (+) True AMCG00005965
AMCG00005935 mRNA upstream 202436 12894267 ~ 12894633 (+) False AMCG00005935
AMCG00006062 mRNA upstream 257405 12785301 ~ 12839664 (+) True AMCG00006062
AMCG00005926 mRNA downstream 3021 13110844 ~ 13117181 (+) True AMCG00005926
AMCG00005942 mRNA downstream 130499 13238322 ~ 13240049 (+) True AMCG00005942
AMCG00005941 mRNA downstream 136971 13244794 ~ 13250175 (+) True AMCG00005941
AMCG00005940 mRNA downstream 158559 13266382 ~ 13273509 (+) True AMCG00005940
AMCG00005950 mRNA downstream 289667 13397490 ~ 13408360 (+) True AMCG00005950
TU195694 other upstream 63661 13025764 ~ 13033408 (+) False AMCG00005964
TU195534 other upstream 383056 12711778 ~ 12714013 (+) False AMCG00005984
TU195532 other upstream 389632 12706491 ~ 12707437 (+) False AMCG00005987
TU195530 other upstream 398539 12697348 ~ 12698530 (+) False AMCG00005987
TU195527 other upstream 400750 12691816 ~ 12696319 (+) False AMCG00005987
TU196052 other downstream 989981 14097804 ~ 14098696 (+) True G155637
TU196053 other downstream 1000350 14108173 ~ 14109870 (+) True G155638
TU196155 other downstream 1268172 14375995 ~ 14383580 (+) True AMCG00006009
TU196402 other downstream 1995633 15103456 ~ 15105567 (+) True AMCG00006092
TU196404 other downstream 1999386 15107209 ~ 15107734 (+) True G155932

Expression Profile