RNA id: AMCG00005928


Basic Information

Item Value
RNA id AMCG00005928
length 1857
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00005928
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10207320 ~ 10218325 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTCAAGAAGAGACTCAGGATCTAAAAATGAAGGGTACACAGGGTTCAGGCTGGTGAATGGCACTGACTCCTGCTCTGGCCGAGTGGAGCTGCGGTACTACAGTGAATGGGGGACAGTCTGTGGTCACTATTGGGATCTGAGAGACGCCAGCGCTCTCTGCCGGCAGCTGAACTGTGGGTTTGCTGTAGCGGCTCCAGGACAGGCCAGGTTTGGAGAAGGCAGTGGCTCAATTTGGGCTGATGTGTTTGAGTGCCAGGGTAATGAGACACAGTTGTCTAAGTGTCCAGTGTCTACATGGGAACGTGGTCCATGTAGTCATGGTGACGATGCAGGAGTCGTTTGCTCTGagtcATCCTTCTCCCTCTCAAGTGGAGTCAGGCTGTCGGGTGGAGAGAGTCGCTGCGCAGGCCGGGTGGAGGTGTACTACAGCAGGACCTGGGGCAGAGTTCTCCAGGACTCCTGGGGCTCCAGAGAGGCCTCTGTGCTGTGCAGACAGCTGGGCTGTGGCTCCGCAGTGGAAGTCTATAACTCCTCTCTGTATGGGACAGGTGACAGTGACGTGTGTCTGACAGGTATTCAGTGCTCTGGGAACGAGTCTCACCTGGGCAACTGCAGCTCTCCACAGACACTCAACTGCAGCTCCAGACATGGTGTGGCCGTGCTCTGCTCAGACCACAGGTCCCTCAGGCTGGTCGGAGGAGATGATCCCTGTGCTGGGAGGCTGGAGGTGTATCACAGTGGCTCCTGGGGGATGGTCTGTGATGACTCTTGGGACCTGGCAGACTCTCAGGTGGTGTGCAGGCAGCTCCAGTGTGGGACGGCCCTCAGGGCCCCAGTGCCAGCCTCCCTCAGCCAGGGAACTGGACCCATCTGGCTGGACGAGGTGGGCTGTCTGGGGAATGAGTCGTCTCTGTGGGAGTGTCCCTCAGCAGGGTGGGGACAACATGACTGTGGATACAAGGAGTACATAGCAGTGATGTGTTCAGAGTTCAAACAGCTGAGACTGGCTGATCAGTGTTCTGGACCTCTGGAAGTGTTCTACAATGGCGTCTGGGGCAGCGTCTGTACCAACAACATGGATTCATCAATAGCTACAGTGGTCTGTCGTGAGCTAGGCTGTGGAGACCAGGGTTCATTTTCAGAAACGCGCTCACGCCTGGGGAGTGGTGCTCCCAAATGGCTTGATAATGTTCACTGTCAAAGGTGGTACTCTACATTGTGGCAGTGCCCATCATCTCTCTGGAATCAGACCAACTGTGAAGACTATGAGGTGGCAGAGATCACATGCTCAGAGCCCTTGGACCTGCGGCTGACTGGCCCCGATAACTGCTCTGGCCGGGTGGAGGTGCGCTATGAGGGCTCCTGGGGGACAGTCTGTGATGACTCCTGGGACCTGCAGGATGCCCAAGTGGTCTGCAGGCAGCTAGGCTGTGGGGATCCGGTGAGCATTGTGGGAGAGCGAAACTCTTCATTCGGGAGAGGAAATGGTACCATCTGGCTGGACGAGGTGACCTGTAGAGGCAGTGAGCTGCACCTCTGGGACTGCTGGCACACCCCAATGGGACAGAGCGACTGCAGACACAAGGAGGACGCAGGGGTGATCTGTGCAGCTGATAACGGGCCGCTGGTACAGAATCAGCTGCTGCAGGGTGTCAACATCCCAGCGCTGGTCTTCCTGGTGCTGTGCGCTGTGCTGTTCGTGGTGCTGGCTCTGCTGGTTGGGCAGCTGCTGCAGAACAGGAAGCTGAAGAAAGCCTTATCTGAGGTGGAGGTCGGCCCCTTGCATGAAGCCGTCTACGAGGAGATTGAGTACAAATTGGCCAGAGAGGGAACCTACAGCGCCCCCAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194448 lncRNA upstream 127884 10078307 ~ 10079436 (+) True G154388
TU194391 lncRNA upstream 263177 9905772 ~ 9944143 (+) True G154343
TU194291 lncRNA upstream 765939 9440493 ~ 9441381 (+) True G154252
TU194189 lncRNA upstream 1013133 9192296 ~ 9194187 (+) True G154175
TU194154 lncRNA upstream 1098950 9100429 ~ 9108370 (+) False G154147
TU194520 lncRNA downstream 48948 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 67189 10285514 ~ 10332094 (+) False G154447
TU194535 lncRNA downstream 84632 10302957 ~ 10303497 (+) True G154451
TU194536 lncRNA downstream 85893 10304218 ~ 10304909 (+) False AMCG00005851
TU194527 lncRNA downstream 109710 10328035 ~ 10328999 (+) True G154447
AMCG00005934 mRNA upstream 70604 10132128 ~ 10136716 (+) True AMCG00005934
AMCG00005802 mRNA upstream 117551 10076345 ~ 10089769 (+) True AMCG00005802
AMCG00005798 mRNA upstream 154511 10043818 ~ 10052809 (+) True AMCG00005798
AMCG00005799 mRNA upstream 174498 10020967 ~ 10032822 (+) True AMCG00005799
AMCG00005806 mRNA upstream 239173 9946752 ~ 9968147 (+) True AMCG00005806
AMCG00005927 mRNA downstream 42324 10260649 ~ 10261465 (+) True AMCG00005927
AMCG00005929 mRNA downstream 48948 10267273 ~ 10271460 (+) False AMCG00005929
AMCG00005851 mRNA downstream 79564 10297889 ~ 10304837 (+) True AMCG00005851
AMCG00005820 mRNA downstream 194200 10412525 ~ 10416137 (+) True AMCG00005820
AMCG00005819 mRNA downstream 204784 10423109 ~ 10428966 (+) True AMCG00005819
TU194450 other upstream 119628 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 130818 10065160 ~ 10076502 (+) False AMCG00005802
TU194377 other upstream 323365 9881382 ~ 9883955 (+) True G154330
TU194323 other upstream 617522 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 769051 9435900 ~ 9438269 (+) True G154251
TU194579 other downstream 244212 10462537 ~ 10468351 (+) False AMCG00005821
TU194578 other downstream 252218 10470543 ~ 10471631 (+) True G154486
TU194591 other downstream 294179 10512504 ~ 10516390 (+) True G154499
TU194711 other downstream 504007 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 695072 10913397 ~ 10915729 (+) True G154636

Expression Profile