RNA id: AMCG00005930


Basic Information

Item Value
RNA id AMCG00005930
length 3258
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00005930
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10187612 ~ 10196882 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGCTGCCTGTCCATCTTTTCTCTGGCTGTCCTGGTTCTGCACACAACAGCCACTCATACAGATGAGGCAATGATTCACTCAGAGACTGGGAGCCGGGGGCCGGGGCTCAGGGTCTGGGGCAGGGGGGCAGTCCAGCTGCTCAGGGAACAGAGGAGAATGAACAAGTGTGGTCTGACTGTTCCAGCAGATCCTGTCTTTGAGGGTTGGTGCCAGATCGAGAGGCCAGAGAGAAAGGACATCAGAACAGAAGAGGAGAACAGAACACCAGAACAGaaaatttgaatgtaaaaacTATGTGACACTGAATAATACAATATCATTAGAGAGTCCAGGAATATGCTTGTCTCTAGATTTCCTgatcttttaaaaacatgaggagaggagaaacaaatcacaaactgcaacagaaacaagatacattttctctctttaaagGATCAGCAAGGCTGTTTCAACAGGCCCatcaaaaatatttgaaacattcaGGAAATCTATGCAATCTGTTTTGCTCATTGGGTTGCATAATATGCAAATCAAGGTCTCATAAACTCTCCTTTATTAGTGTTCTAAAATAATAGTTGAgagtttttaaacatgtatttgacattaatgtcacattttagtGGCTATAGGAAATCAGAATGATTGTACTGTTATAATGTACAGATATGGTGGCCCTATCACTCAGGAATTTACAGATGCTACAGAACCACATGAGAGACCCGATGAGGAGCCAATGAAATTCCTAGATCTGATCTAGAGTTTCACTTGTTTTCTGCAATGATTTAATAATAGGTCTCTGAGGATCTGGAGCCCATTTTTGTCTTTTACCATTAAACGGGAAAGTACATGCTGAATCTGATAAGATTAGGGAGAGTAAGGAGACGTGTTCTCTATGGGGGATGTGAAGTGAATGTTCGCAGAGATGGCAACCAGAGGAATAGGAGgggagagagagattactTCACACCATCTCTCAGATCTGAGGCTTGTGCTTCTGGGTGGTGAATCAACCGGAAAGAGTTGCTCAGGAAACACCATCCTGGGCAGAAAGGAATTTCAGACTGGAATTGGAACTAAAGAGTGTGTAAAGAGCCAAAGTGAGGTAGCTGGGAGGCAGGTCACTGTGGTTGACACACCAGGCTGGGCGTGGTGTTTTATCCTGCACTCTGTAGAGCAGCTAGAACAAAAGCTTGTGCGtagtctgtctctgtgttccCCTGGACCCCACGCTCTCCTCCTGGTGATTCCTGTGGGCTATGTCACAGAAGATGATAGGAAAGCAGTTGAAGAACACTTGAAACTTTTCAGTGAGACGGTCTGGAGACACACAATagtgctgttcaccaaaggggACAGACTTAAACAGCGGACCATTGAGCAGCATATTGAGCAAGAAGGAAGGGATCTACAGCAGATTGTTGAAAAATGTGGGAACAGATATCATGTTTTCAACAATGAGAACAAGGGAGATTGCACTCAGGTCACAGAGCTCCTTCAGAAAATAGAGCAGATGGTGGCAGCCAATGGTAGCAGCTACTACCTCAATAAGATGTATCAAGTGATGGAGGAAATCATTAGACTGCTGGAAGATACATTGAAAGAGAGGAATGAtgatggagacagagagaagattAAGAAGTGGTATGAGAAAAGAGAAGAGGAAGTCAGACAGAGGTATGAGGAGatggacagaaagagagaacatGAGTTGAAGGAAAAGTTTGAGGAGGAATGGAACCGGAGAGAGAAGGAGCTCATGGAGAAGAGAAATACATTGAAGCAAGTGGAgcagaagaaagagaaggatgAATCCGATTTGTCTGTCAAGAGCAGGAACGGCATGGACCCCACCATCCTCATGTCTGAATGTGATGGAGCAACTCCTAAGAGAGAAGTAGGAGAGACTGCCATAGAGAAACAAGAGCTGAAACAGATGGCTGAGGAACCACTCAAAGAGAAGGAAGACCTGAGGTTGAATATTAGAAAGTCACTGCAGGAAGAAGAGTTGGAGAAAGAGATGGAGCACCACAACCTCCTTGTCAATGGGAGAATCAACAAACATGGTTCCACTGCCAGGATGACACAGATTGCTTCTGGTGAGCTGAGGATTGTGCTGCTGGGGGGGACAATGGACGGAAAGAGTTCAACTGGAAACACACTCCTGGGCAGAGATGAATTTAAAGCTAACATTGTTGGAGGAACTAAGGAGTGTGAGAAGAGACAGGGTGAAGTATCCGGGAGGCAGGTCATTGTGGTTGACACACCTGGCTGGAGCTGGGATTCTATAAATCTCACACCAATATGGGTTAAAGAGAAGATTGTACAGAGTGTATCTCTGTGTCCCCCAGGCCCCCACGCCCTCCTCGTGGTGTTTCCTGTGGACTATGTAAGAGAAACAGACAGGAAATCAATGGAGGAACACCTGAATCTACTTGGCGAGAGAGTCTGGAAATACACAATATTGTTGATCACCTGTGGGTACAGACTGGGGAACACATCCATTGAGGAACATATTGAGAAATGGGAACCCCTCCAGCAGTTCATTCAGAAATGTGGAAACCGATATCATGTTCTGGAGAACAAGAACGGGGGTAATTGTACCCAAGTCACAGAGCTCCTTGAGAAAATTGAGGATATGGTGGCAGGGAACAATGGCAACTACTACTGTAATGATATATACCAGAATGTCGGAGACCAGATTATGCAGAACGAAAAAGAAGACAGACTGAGAGCAGAGACAGTGGGAGTCAGGGAAGGGAAGAGGAGGTCTAATGAGAGTACCAACAGGCTCATATGGATTTCTGTGTTGCCAGCATCAGTAACACTAGGAGCAGGTGTAGGAGCAGTATTAGGGGCAATAACAGGAGCACTGAGTGGACCATTAGGGACAGCAGTAGGAAGTGCTATAGGAGCTGTAGCAGGAGCTCAGGTGGGAGCTTTAATGGGAGGGGAAGCCAGAGCAGTATTGAGAGAGCCGTAGACACACAACACTCTCTTTACAGCAGCAGTAGTGATGGACACCGTGACAATTAAAGAGAGCACAGTACTTTGGTAAGGGGTTAATCATTTCTTGAGATACAATCCCCGGTGAGggaaattcattttcattttttggtgaAGAATTAAAGGTGAACGTCTACTCTGAATAGAGTGATACTGCTATAAAGCATATGCTGtaactgaaaatattaatatttaacagtTTCACATTATctaaactgtaaatatataaatattttttgtaaattg

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194465 lncRNA downstream 42681 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 48687 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 95996 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 614704 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 749713 9435880 ~ 9437899 (-) True G154260
TU194684 lncRNA upstream 346652 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 379088 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 493266 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 541662 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 605682 10802564 ~ 10818716 (-) True G154675
AMCG00005931 mRNA downstream 63727 10107257 ~ 10123885 (-) True AMCG00005931
AMCG00005933 mRNA downstream 88096 10096144 ~ 10099516 (-) True AMCG00005933
AMCG00005801 mRNA downstream 106403 10069124 ~ 10081209 (-) True AMCG00005801
AMCG00005800 mRNA downstream 122162 10058921 ~ 10065450 (-) True AMCG00005800
AMCG00005809 mRNA downstream 240916 9943691 ~ 9946696 (-) True AMCG00005809
AMCG00005932 mRNA upstream 32986 10229868 ~ 10271524 (-) True AMCG00005932
AMCG00005850 mRNA upstream 98717 10295599 ~ 10344002 (-) True AMCG00005850
AMCG00005849 mRNA upstream 158154 10355036 ~ 10370381 (-) True AMCG00005849
AMCG00005848 mRNA upstream 177541 10374423 ~ 10377678 (-) True AMCG00005848
AMCG00005825 mRNA upstream 187901 10384783 ~ 10387397 (-) True AMCG00005825
TU194289 other downstream 752672 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1095039 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2062927 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 2186272 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 2399291 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 118498 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 118498 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 646959 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 709413 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 713634 10910516 ~ 10912745 (-) True G154677

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018507 True 1062 mRNA 0.42 2 NC_007126.7 36353080 ~ 36356264 (-)