RNA id: AMCG00005931


Basic Information

Item Value
RNA id AMCG00005931
length 1908
RNA type mRNA
GC content 0.52
exon number 18
gene id AMCG00005931
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10107257 ~ 10123885 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGAGAACATGGATTCAAACGGCAGTCTTCATTTAGAGAAAACCTCGACCAAATCGAGTTCAAGTGCCGGGAAGGTTTGCAGTAGCTGTCTGCGACGTCTGCAAGCTTTAATACCGATCAACTACAAAGAGGAGCTTGTCCAGATTGTAAAAATAGCAGGACCTGTGTTCATCTACCAGCTATTGGTCTTTATGATAAACGTTGTTAGTTCTGTGTTTTGTGGCCATCTGGGCAAGACCGAGCTAGCTGCCGTTGCGTTGGCCGCTTCAGTTGTAAACATTACAGGGTTCTCCATTGGATTAGGCATAGCGTCTGCCTGTGACACACTTATATCTCAGTCAGTAAAAGTGAATTATATCTCTGTATTGCTACCTATTTATGTAGATACATCCCCTGCGCTGGGTCTGATGTGTTTTCCTCTGATCCACACACGAGAAGCACACACccccattgagatcacaggagtAAAGGTGCAAAACATGGCCCCCGCGGCCCCTGACCCTGTACTGACCCTGTTTGTGCTGCAGACCTTCGGCAGCTGTAATCTGAAGCGTGTGGGGGTCATCCTGCAGAGAGGGGTGCTGATCTTGCTGCTGGCCTGCTTCCCTTGCTGGGCTTTTCTCATCAACACAGAGCCCATCCTGCTGGCTGCGAAGCAGAGCCCCGAGGTGGCCAGATTGGCGCAGCTTTATGTGAAGATATTTATGCCCGCTCTTCCGgcaGCATTCCTCAGTCAACTGCAAGCAAGATACCTACGGAATCAGGTTATCACTGGTGTGGTGGGCAATGTTTTAAACGCCCTTATAAACTACATCTTTATGTTTGTGCTAGATCTGGGAGTGGCCGGATCGGCGGCGGCCAACAGTCTCTCCCAGTACTCCCTCGCAATCCTGCTGTATGCGTATATCATCTGGAAGAAACTGCACAAGGCGACATGGGGCGGCTGGTCCACCGAGTGTTTGCAGGAATGGGGTCCCTTCATCCACCTGGCCATTCCCAGTATGCTCATGTTGTGCCTGGAGTGGTGGGCCTTTGAGCTCGGAGAATTCCTGTCAGGAATGGTGAGCGAAGTGGAATTGGGATCGCATTCTGCCTTTCACCAACTGATCAACATTGCATACATGTTCCCTCTTGGTTTCAGTGTGGCTGTCAGTGTGCGAGTGGGCAATGCCCTGGGGGCTGGAAACACAGAGAAAGCAAAACTTTCGGCCAAAATAGGCATTGCTTCTGCAGTTCTACTCTCAGCGTTTGTAGCTGCTATAATCGGGGGGACAAAAGATGTCATCGCCTACGTCTTCACTGATGACCCGGATATTCAAGACAGGGTTCCACAGGTGATGGTTCTGTACGCTCCGTTCCACATCTTTGATGCAACAGCGTGTGTGACCACGGGAGTGGTGAAGGGGGCTGGCAAGCAGAAGTTTGGAGCGATAGCTATACTGGGGGGATACTATTTGATCGGTCTTCCCATTGGAGTTTCCCTAATGTTTGCTGCACACATGGGAATCATTGGGCTGTGGACGGGCTTGCTAAGCAGTGTGGTGCTCCTGTCTTGCTTCTTAATTGTCTTAATCATCAAAATGGACTGGAACAAGGTCACAGAGGAGGCACTGTTGAGAGCTGGGGCACAGAATGCACCCCACAGAGACAATGGCATAGAGAATGCCCTCAGGACCCCCAGCCCCTCGATGGacaCTTTGCAGCAGATGCAGATGGAGGACCACAACCCTGTGGGGAGCCACACTGACCTGGGTCTGGGTGAAGAGGGACAGGTAGCAAGAACGTCTGTCTTCACCGTGGGGGAGGTGCTGCCCTTCAGGTCGCTGGTCGTGCGCCGGGGGTTGGCTGTGTGTGGCGCGATCTTCATCCTGGCAGTCGGAGTCATCATTAACTTGgtcatttaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194453 lncRNA downstream 15641 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 534349 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 669358 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 713924 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 775224 9331343 ~ 9332033 (-) True G154235
TU194464 lncRNA upstream 13543 10137428 ~ 10138925 (-) True G154399
TU194465 lncRNA upstream 20598 10144483 ~ 10144931 (-) True G154400
TU194684 lncRNA upstream 419649 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 452085 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 566263 10690148 ~ 10693965 (-) True G154642
AMCG00005933 mRNA downstream 7741 10096144 ~ 10099516 (-) True AMCG00005933
AMCG00005801 mRNA downstream 26048 10069124 ~ 10081209 (-) True AMCG00005801
AMCG00005800 mRNA downstream 41807 10058921 ~ 10065450 (-) True AMCG00005800
AMCG00005809 mRNA downstream 160561 9943691 ~ 9946696 (-) True AMCG00005809
AMCG00005810 mRNA downstream 200945 9891658 ~ 9906312 (-) True AMCG00005810
AMCG00005930 mRNA upstream 63727 10187612 ~ 10196882 (-) True AMCG00005930
AMCG00005932 mRNA upstream 105983 10229868 ~ 10271524 (-) True AMCG00005932
AMCG00005850 mRNA upstream 171714 10295599 ~ 10344002 (-) True AMCG00005850
AMCG00005849 mRNA upstream 231151 10355036 ~ 10370381 (-) True AMCG00005849
AMCG00005848 mRNA upstream 250538 10374423 ~ 10377678 (-) True AMCG00005848
TU194289 other downstream 672317 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1014684 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1982572 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 2105917 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 2318936 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 191495 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 191495 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 719956 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 782410 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 786631 10910516 ~ 10912745 (-) True G154677

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038967 True 2261 mRNA 0.45 17 NC_007132.7 39992151 ~ 40015530 (-)