RNA id: AMCG00005933


Basic Information

Item Value
RNA id AMCG00005933
length 699
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00005933
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10096144 ~ 10099516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGATCTGTTATCTTCCCCATATTTTTAGAGGGTCTGCAGCAGCCAACTCCATAGCTCAAATCTCCATCTGTATACTTTTGTTTGCCTACATCCGATGGAAGAAACTGCATATAGAGACCTGGGGAGGCTGGTCTACAGCATCCCTGCAGGAGTGGGGGGCCTTCATGCAGCTGGCCATTCCCAGCACCCTCATGACGTGCTTCGAGTGGTGGATTTTCGAGATCGGGAACATCCTAGCAGGTATGCTCGGGCAGATAGACCTTGGGGCCCAACATGTGATCATGGAGTTGTCAGCAATTACTTATATGATCCCCTTGGGAATTGAAATAGCGGCCTGCGCGCGTGTGGGGAACGCGCTGGGGGCCGGCCAGACTGACAAGGCGCTCTTGTCCAGCAAGGTTACCCTCATCTTTGCAGgTTGTCTGTCTGGGGTTTTGGCCATCATACTGGGATCCACAAAGAATGTGATTGGCTACATCTTCACCTCTGATGAAGAGATTGTGCAGACGGTTTCACATGTCATGAACGTTTATCTTCCACTGCAGATTTGCGATGCAATTGAGtgtgTCTCTTCAGGCATCTTCCTGGGAGCAGGAAAGCAGAAGATTCCAGCAATCGTCAGTCTTATTATATACTACTCCATCGGTCTCCCTGCTGGGATCTCTTTAATGTTCACAACAAAGCTAGGAGTCGTT

Function

GO:

id name namespace
GO:0006855 drug transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0015297 antiporter activity molecular_function

KEGG:

id description
K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194453 lncRNA downstream 4528 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 523236 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 658245 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 702811 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 764111 9331343 ~ 9332033 (-) True G154235
TU194464 lncRNA upstream 37912 10137428 ~ 10138925 (-) True G154399
TU194465 lncRNA upstream 44967 10144483 ~ 10144931 (-) True G154400
TU194684 lncRNA upstream 444018 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 476454 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 590632 10690148 ~ 10693965 (-) True G154642
AMCG00005801 mRNA downstream 14935 10069124 ~ 10081209 (-) True AMCG00005801
AMCG00005800 mRNA downstream 30694 10058921 ~ 10065450 (-) True AMCG00005800
AMCG00005809 mRNA downstream 149448 9943691 ~ 9946696 (-) True AMCG00005809
AMCG00005810 mRNA downstream 189832 9891658 ~ 9906312 (-) True AMCG00005810
AMCG00005811 mRNA downstream 205561 9870078 ~ 9890583 (-) True AMCG00005811
AMCG00005931 mRNA upstream 7741 10107257 ~ 10123885 (-) True AMCG00005931
AMCG00005930 mRNA upstream 88096 10187612 ~ 10196882 (-) True AMCG00005930
AMCG00005932 mRNA upstream 130352 10229868 ~ 10271524 (-) True AMCG00005932
AMCG00005850 mRNA upstream 196083 10295599 ~ 10344002 (-) True AMCG00005850
AMCG00005849 mRNA upstream 255520 10355036 ~ 10370381 (-) True AMCG00005849
TU194289 other downstream 661204 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1003571 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1971459 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 2094804 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 2307823 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 215864 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 215864 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 744325 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 806779 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 811000 10910516 ~ 10912745 (-) True G154677

Expression Profile