RNA id: AMCG00005934


Basic Information

Item Value
RNA id AMCG00005934
length 2571
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00005934
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10132128 ~ 10136716 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGAATGAATCCATTACAGCTGGAAGAGAATGGCTATCCTGATCAGGTCATAAATATCGGACAAATAATACTTGGAGAAATAGCCAGGAAACGCATGCAGGCGAAGGATCGCGAAGTTCAGAAACGGCGAGTTTTGCAGGCCGCCTGTGCTTTGCTGAATTCAGGTGGAGGACTTATTCTCGCAAAAAGCAAGAACACAGAGTACAAATACCACGATGGCCTAGGCGGTGACATTGAGAAAGCATTGAGAGAACTTATTTTTCCTTCATCACTACAAGActattttgaatatttacaaCAAGGCATACATTTAATCGTTTTTGTAAAATCATGGTGTGCAGATAATACACAAGCAAGGATATGTAGCATTGATACTTCCCTGTACAGAAGGTCTGGTACTTCAACTGAAAAAGTTGCTCCTAGTGCATTTTCAGagctccaaaagaaaaaaaagcatagagcagaaaagagagagagaaaccaacAACCAGCAGTAAAGAGGCCTAACATAGAGCACAGAAGTGTAGATGAAATTGGAGCATCTGTTGAACAGTTCTGTAAAAAGCAACAAGTGGGACTCGGAGAGAAGTTAACTTTTGGTGAGACTGcaaatgtagaatttaaaagtTGTAAAGGAACAAAGTTGTCTAAATGGCTGGAAAGAGACCTTCGGAGGTATATATCTggctttaaaaatgcagatggAGGATTTCTGATCTTTGGTGTTGACGACCAAACAAAAGAAATTGTGGGATGTGGTAATAATGAAGCCAAACACTGCATTCAAGACAAAGTGCAGGCCATGTTTGAAAAGACTGTATCAGTTCACTTTGATCATTGTGACTCACAGAAGATGGTTCCTCCTGCAGTcttttttattgatgttttggaTGCAGAAGACCTCTACGTACTGGTTATAGAAAtccagccatcttgttgtgtggTCTTCTCCAAATGCCCAGACTCCTGGGTGATTGAAGATCAAACAATGAAGGAATTGGAAGCTGCAGTTTGGCTGGAAAAGATGTCCTGTACTGATCAAGTTGGAAGTGAAGGAATAAAGGTTACACCAGAGTCCATTACCAAGGACTTGTTTGAAAAGTTCCCAGGACTTGAAGGATTGAAGGATGCAGAAGGACATCATGGTGCTCTAATATTCTCTTACAGCTGGGCTGTTGACTTAGACACACCAAAGAATGAAAGTATTATCTGTGATGCTTTACTGATCTCTTCAGACAGGCATCCTATTTTTTACACAATTGTGAGAAAAGAAACTCCTGATTCCTGGAAATATGCGAGAGAGacagcttttcttttgaagCAAAAACTGGTGAATGTTGGAGGATATTCAGAGAAGACGTGTGTCATTCCAAAGCTAGTGGACTGCAACACAGGTGGCATAATTCCAAGAGTGAACAATCCTGTTGACAGTGAACAAATCTTGGTTAATTACCCTGATGGCTACATCTTGAGGGACATAACATCAGTGAAAGCCTTGCTGCGTGCCTTAGTGATTGTGTTGCTGAGCTTCAGCTCATTTCTGAGTGACCAACTTGGGAGCAAGTTCTTGAATTTGCTCACAATACAGCAGTTTGAGGTTCTCAACTATAAATACTGTTTCCAGGATTTCAAACGGCTCTTTGTTCATGGTTTACCTGGAACTGGAAAGACTGTCATTGCAATGAACCTGATGAAAAGAATTAAGAATACATACAACTGcgaaataaaaaatatccttTACATTTGTGAGAATCAACTACTGAGAGATTTCATGAGACAGAATATTTGCCAGTGCACAACACGCAAGTCATTCATGTCACCCTACAATGATTTTGCCGAAGCAGAGCACATCATTGTGGATGAAGCCCAGAATTTTCGTCAAGAGGACGGAGATTGGTATAAGAAGGCAGAAGGTATCATGGAGCGAGGAGAAAACAATGGCGTGTTTTGGATCTTTGTAGACTACTTCCAGAAGAGtcacacagaagcagatggtTTACCTGACGTTTTCAGACAAAACCATGTAATCTTAACAGTATGTGTGCGAAACAGCTTCAGGATATATAATGAagtttctaatttaattaaggaaataagCAGTGGCACAATTGGAAGACAGTACAGAGGCAGTATGAaagaacatttagaaaaaatcaCACGTAACTCTGTATGTAGTCACTCATTCCAAGGCacctacagaaaacaaaaagtaaaggAAATTGTCCCATTCATAGTTATGTCTGTTAACACTCTCTTCAGTAAGGGCTTTTTGCCAAGGGACATTGCTATTCTTCTTTCTAATAACCAAGAGCTTGAGGACTTCCGTAGAAGGTTATTGCAGCACAGCGATAAAAGTCTTCTTTGCAAATTTGCCACAGAAAGTGATGCACATGAAGACCTGATTGTAGTAGAAACCATTCGTAGATTCTCTGGCCTTGAAAGAAATATAGTGTATGTCCTCAACCCAAAGACCCACTATTGGCAACTAAACATACAACCAAATCTACTGGTTAGTGCTATATCAAGAGCACGTACACAGCTATACTTGGTGTACAGTACTTCTGAATAA

Function

GO: NA

KEGG:

id description
K24459 SLFN13; schlafen family member 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194448 lncRNA upstream 52692 10078307 ~ 10079436 (+) True G154388
TU194391 lncRNA upstream 187985 9905772 ~ 9944143 (+) True G154343
TU194291 lncRNA upstream 690747 9440493 ~ 9441381 (+) True G154252
TU194189 lncRNA upstream 937941 9192296 ~ 9194187 (+) True G154175
TU194153 lncRNA upstream 1023758 9100429 ~ 9108370 (+) True G154147
TU194520 lncRNA downstream 130557 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 148798 10285514 ~ 10332094 (+) False G154447
TU194535 lncRNA downstream 166241 10302957 ~ 10303497 (+) True G154451
TU194536 lncRNA downstream 167502 10304218 ~ 10304909 (+) False AMCG00005851
TU194527 lncRNA downstream 191319 10328035 ~ 10328999 (+) True G154447
AMCG00005802 mRNA upstream 42359 10076345 ~ 10089769 (+) True AMCG00005802
AMCG00005798 mRNA upstream 79319 10043818 ~ 10052809 (+) True AMCG00005798
AMCG00005799 mRNA upstream 99306 10020967 ~ 10032822 (+) True AMCG00005799
AMCG00005806 mRNA upstream 163981 9946752 ~ 9968147 (+) True AMCG00005806
AMCG00005807 mRNA upstream 188804 9941462 ~ 9943324 (+) True AMCG00005807
AMCG00005928 mRNA downstream 70604 10207320 ~ 10218325 (+) True AMCG00005928
AMCG00005927 mRNA downstream 123933 10260649 ~ 10261465 (+) True AMCG00005927
AMCG00005929 mRNA downstream 130557 10267273 ~ 10271460 (+) False AMCG00005929
AMCG00005851 mRNA downstream 161173 10297889 ~ 10304837 (+) True AMCG00005851
AMCG00005820 mRNA downstream 275809 10412525 ~ 10416137 (+) True AMCG00005820
TU194450 other upstream 44436 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 55626 10065160 ~ 10076502 (+) False AMCG00005802
TU194377 other upstream 248173 9881382 ~ 9883955 (+) True G154330
TU194323 other upstream 542330 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 693859 9435900 ~ 9438269 (+) True G154251
TU194579 other downstream 325821 10462537 ~ 10468351 (+) False AMCG00005821
TU194578 other downstream 333827 10470543 ~ 10471631 (+) True G154486
TU194591 other downstream 375788 10512504 ~ 10516390 (+) True G154499
TU194711 other downstream 585616 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 776681 10913397 ~ 10915729 (+) True G154636

Expression Profile