RNA id: AMCG00005943


Basic Information

Item Value
RNA id AMCG00005943
length 1998
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00005943
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13240482 ~ 13244787 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAACCCGCCGACAGCCGCGTCTGAAGTTGGGTGCTGGCTTTAAAAGAGCCCAAATCAGCGTGGATTTGcgattttgtattaaaaagacaaagcagaAGTAACACAGCCTCCCCTCATGCGATGCCGTGAATGCACAACCGACTCTGATCAATgcaaaaacccaaacaaaacgaGACGCATTGTGCATCAATTGCATTGTGGGACTTcgtatacatataaaaaaTGTTATCCTGATGTGGCTATGGATGGGAATAGTGGAAATGGGGAACCAGCGGCAGAACTGACCGGACACACTTCCACCAGTCCAGAGCAGCTGGTGAACAAGTCCAGGACTGACGCTCCCTTTGATGATGTCACTCTGGGGGACAACCCCGCCGACCCAAGTAAACAGACCGTGGTCCTCCACCTGATTCCCGTCGACCAACCCGAACTGTGCTCCGGTGTGGACTGTGCCCCGGAGAGAAGCGAGGACGGTCTGAGCCGACACGCCACCACCCTCACCAACCGACAGCGTGGCAATGAGGTCACTGCCAGGCCGGCTACTCTAGACACTCTCTCGGTGCACCAGCTGGCAGCGCAGGGGGATCTCTCCCGACTGGCCGAGCACCTGAGCAGAGATAGCAATCTCGTCAACAAGATGGACGAGCGAGGCTTCACTCCCCTCATGTGGGCCGCAGCGTTCGGGGAGATTGCCGCCATCAGCTTCCTCCTGGAAAAGGGAGCGGACCCCCACATTCTCGCCCGTGAGCGCGAGAGCGCCCTGTCCCTGGCCAGCTCGGGGGGCTACACTGACATCGTCAACATCCTCCTGAAGCGCGGCACCGACATCAACACGTACGACTGGAACGGGGGCACCCCTCTCCTGTACGCAGTGAGAGGAAACCATGTGAAGTGTGTGGAAGCCCTCCTGGGATGGGGGGCAGACCTCACTGTGGAGGCGGACTCGGGGTACAGCCCCATGGACCTGTCTGTGGCCCTGGGACACAAAAAGGTGCAACAGGTGATCGAGAACCACATCCTGAATCTCCTCAAGCAGGAGGAACATCAGCCAGAGCAGAAGTGAGGGAGGCCAGGGAGCGGTACGTGCCAGACGCCCCAGCTCCCGGTCTGTCGGGGCACATGGGCACTGTGGTCTGTGGGCAGGCTGTGGCAGACCCCGGCCTTCAGAGGGAAGTGGGACCATGCAAACCAACGTCTTCTCAATGCCCTGTGTGTCTAGAAATTCCCAGAAGcacctttttattattagctGCATACTGGCTCAGCTGGACGGATTATGCTTTTTCCTATTTTCAAGTTTGCACTGATGCATGATTgcactattgtttttttccagtgtgtgtgtgtgtgtgtgtgtgtttggaggaATCCCGTCTCTGTACAAACTTGCTATTTGTATTTTCGGGTCAAAGAGTTGCGTAAAATacgtaaaataaaatgaaaacatcaggATTTTCAGATCGGCACTGCCTAGGAGTTGATACCAATATATCCTGCCATTGAAACTGCCTGGTATGTAGTGGAGAAGAGCAGGGAGTTTGTAATGGTATGTAATCACAAGTTAGTGGCACAGAAGGTCATCTCACACTCATGACTGCTGTTCTAGGGGCCAGATATTAGTTCTCAAGAAAGCATAACTCATCAAAATCACTAAGGCTAAAAATTCGACTGACTGGGGCCCGAGAGGAATCGAGGGggtgtttaataataatcagttcTTTCCATCCCCTCACCCACCCCCCAACACTGTCCTGAGCAGGGTATGAATCTAAAAATCCCACCattcctttgttttctgtatatgaatgtataccaaacacaaatgacaaaacatttgaacaaaacaTGCCAAGCCAACCTGTCGATTCTCTCTTAATAgatttaactgtatttgaagACTTTGTTCTGACTGTGATGTAAGATGTACATTTccaagaaaaggaaattcaaTCCAAAGTTTGTGTGCTTGACTTATTAAAAGAATGAACCACCTTACA

Function

GO: NA

KEGG:

id description
K08062 RFXANK; regulatory factor X-associated ankyrin-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195763 lncRNA downstream 107943 13123557 ~ 13132539 (-) True AMCG00005946
TU195753 lncRNA downstream 132415 13107812 ~ 13108067 (-) True G155400
TU195743 lncRNA downstream 132989 13079485 ~ 13107493 (-) True G155391
TU195718 lncRNA downstream 201930 13036459 ~ 13038552 (-) False AMCG00005966
TU195740 lncRNA downstream 207074 13028204 ~ 13033408 (-) False G155390
TU195785 lncRNA upstream 7335 13252122 ~ 13252489 (-) True G155426
TU195788 lncRNA upstream 22176 13266963 ~ 13267162 (-) True G155429
TU195790 lncRNA upstream 28853 13273640 ~ 13274693 (-) True G155431
TU195881 lncRNA upstream 219668 13464455 ~ 13465588 (-) True G155502
TU195883 lncRNA upstream 222183 13466970 ~ 13484019 (-) True G155503
AMCG00005947 mRNA downstream 58946 13172886 ~ 13181536 (-) True AMCG00005947
AMCG00005948 mRNA downstream 69462 13169077 ~ 13171020 (-) True AMCG00005948
AMCG00005946 mRNA downstream 84164 13131727 ~ 13156318 (-) False AMCG00005946
AMCG00005966 mRNA downstream 188763 13036424 ~ 13051719 (-) True AMCG00005966
AMCG00005967 mRNA downstream 214865 13022361 ~ 13025617 (-) True AMCG00005967
AMCG00005944 mRNA upstream 2967 13247754 ~ 13250688 (-) True AMCG00005944
AMCG00005945 mRNA upstream 34516 13279303 ~ 13284728 (-) True AMCG00005945
AMCG00005924 mRNA upstream 140396 13385183 ~ 13387394 (-) True AMCG00005924
AMCG00005952 mRNA upstream 148871 13393658 ~ 13396684 (-) True AMCG00005952
AMCG00005953 mRNA upstream 217429 13462216 ~ 13462560 (-) True AMCG00005953
TU195614 other downstream 385679 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 568024 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 1885849 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 1901368 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 1915415 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 923303 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 1092104 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 1264446 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1435010 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1537844 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile