RNA id: AMCG00005947


Basic Information

Item Value
RNA id AMCG00005947
length 2487
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00005947
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13172886 ~ 13181536 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAAGGTTACCTAACACTTTGGGAAACTTTGTCACTTGTGTCCTGTGCTGCTCACCGTTGTTGTCTCTGGCTCCCCCCGCAGGCTCGGTGGAAGCGGACAAGCTGGTCAACATGCGCAAGGTGACCCACCGCGTGGTGCAGGAGGAGCTGGCGGCGACGGCCTTCCTTCCCTGCGTGTTCACCCTGCGGCCCAGCCCGTCCCACGAACCGCCCCGTATCAAGTGGACCAAGATCTCGGGCGGCCAGGGGGGTGGGGCCAAGCGAGAGCAGTCGGTGCTGGTCGCCAAGGACAACGTCATCAAGGTCAAGAAGGACTTCCAGGGCCGCGTCACTCTGCCCGGCTACCCTGACAACCGCTACAACGCCACGCTGGCGATGACCGGCCTGCGGTCCGGCGACTCGGGACTGTACCGCTGCGAGGTGGTGGTGGGAATCGATGACGAGCAGGACACAGTGCCCCTAGAGGTCACTGGTGTGGTGTTCCATTACCGCGCCCCCAGTGACCGGTACGCCTTGTCCTTCCCTGATGCCAAGCGGGTGTGCGTGGAGAACTCGGCGGTGATCGCCACACCGGCCCAACTCCAGGCCACCTTCGACGACGGCTACGACAACTGCGacgctggctggctggctgatCAGACCGTCAGGTACCCAATCAGATTGCCAAGGCCTGGTTGCTATGGAGACAGAGAGGACCTACCTGGCGTGAGGAACTATGGCGACCGCCACCCTACAGAGCTGTATGACGTCTACTGCTACGCCAAGCAGCTGCAAGgtGAAGTGTTCCACACTTCAAGACCTCAGCGACTCAGCCTGGCCACAGCCTCCACCCACTGCCACTCCCTGGGTGCCCAGCTGGCCACGGCGGGACAGCTGTACCTGGCTTGGCAGGGGGGCCTGGACCGCTGCGACCCCGGCTGGCTGGCCGATGGAAGTGTGCGTTACCCCATCCGGCAGCCGCGGCGCAACTGTGGGGGGGATGAGCCTGGGGTCAGGACGGTCTACCAGAACCCCAACCGCACTGGTTTCCCTGACACCACCGCCCTCTTTGATGCCTACTGCTACCGAGAGATGCCTGCAGGAGCAGAAGCTGCCGGGATTCTGCTGTCAAAGGAGAAGGACATATCTGACTCCACCCAGGACCCACAGGGGAGCGAGGAGGCCTTGCAGGCTGATTCGCATCACATCCACCACCATGCTGGATGGGAGGGCCAGCCGGACCCTGAGCCCTCGCCCTGGACCGGCCTGGTCAACCTGGAGGGCATCAACTCCATCGCCTCCAACGATTCCACCGAGATCTCCGAGGAGCACGTAGTCATCCACCTGCAGCCAGACCGCAACTCAGCCTCCCAGAGCCACGTCCAGGAGTCTAGCACCCAGGCTGCTCCCCAGGAACCGACCCCTGGGGGCCTGTCTGCTCTGGAGGGGCTGGAACACCAGGGAGGCTCTGCCaaagaagtagaagaagatGAAGGAGAAGCAGAAGTGGACAGACTCTCCCAGGGCGCTGAGGGGCATTCAGGGCAATCCCATCCAGGGTCCCCAGCCTCCCCAAGTCCACAGAGCTTGGATAGCAACAGTCTGCTCATGTCCAATCTGGTTGACTCCCCCATGGGCACAGATGGGTTCTTGGCCGACTCCGCCGAGAAGGTCCTCTACTCCACTTCCGCTAGTGGGACCAGAGAGCCGGGGGAGGCCCACTGGAGGCAGGAGGCTGGAGAGTTAGCGAGGGGACGCCCAATGGGAGCTAAGGTGGCGATGGCCAACAAAAGCCCCGAACCTGAGCTCAACCACCTGACCACTCAGGAGAACGCCATCATGGAGCACTTCCGGGTCAAGGCCTTGCATTCCCGCCTGCCTGTCGATGCACTTCCTGCCTCGAACGAGGAGCTGTCAGATCGGGAGAGAGAGGTCATCTGGGAGCCACACAGGCTGAACACAGCTACTGAAACGAGCCAGGTTACCAACCCCGGTCTGGTCGCAACCGTTCACCACACTGATGGAGCAACACAGCCGGGGTCAACAAGGGATTACGATCTGGTGCACCTCGGCAACCCTGGACCAGCTAGTCTGAATGACAGCAAGAGTGCAGGAGAACCTGCTGCCATTGAATCCAGCAATCACCTCCTCTCAGAGCCATCCCCGTCTCAGGTCCCAGACACCCGTTTGGATGTAGATGTTGCGCTCCGCACCAAAGATCCCAACCCTCATTGGGATAAAGGAAGTGATGCCCCTCAGCACAATCCAGCTGGGCTGCACCTACCCAACTCCACCGTCTCCACAGAGCCTCTTCCTGACGAGTCCTCCACTGCCCAAAATGCAGGCACTGCAGCAGGTGGGAATGACAGGGGAATACAGCTTCAAACAGCTCTGCTATCTAAGAGTATCTGCTATCTGGaggtggtggagggggtggggggggagttgAGGCTAAGCCAGTCCATATACTCCAGAGGGACCAAGGGGAGGGGAAGTGGGGTATAG

Function

GO: NA

KEGG:

id description
K06794 NCAN, CSPG3; neurocan core protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195763 lncRNA downstream 40347 13123557 ~ 13132539 (-) True AMCG00005946
TU195753 lncRNA downstream 64819 13107812 ~ 13108067 (-) True G155400
TU195743 lncRNA downstream 65393 13079485 ~ 13107493 (-) True G155391
TU195718 lncRNA downstream 134334 13036459 ~ 13038552 (-) False AMCG00005966
TU195740 lncRNA downstream 139478 13028204 ~ 13033408 (-) False G155390
TU195785 lncRNA upstream 70586 13252122 ~ 13252489 (-) True G155426
TU195788 lncRNA upstream 85427 13266963 ~ 13267162 (-) True G155429
TU195790 lncRNA upstream 92104 13273640 ~ 13274693 (-) True G155431
TU195881 lncRNA upstream 282919 13464455 ~ 13465588 (-) True G155502
TU195883 lncRNA upstream 285434 13466970 ~ 13484019 (-) True G155503
AMCG00005948 mRNA downstream 1866 13169077 ~ 13171020 (-) True AMCG00005948
AMCG00005946 mRNA downstream 16568 13131727 ~ 13156318 (-) False AMCG00005946
AMCG00005966 mRNA downstream 121167 13036424 ~ 13051719 (-) True AMCG00005966
AMCG00005967 mRNA downstream 147269 13022361 ~ 13025617 (-) True AMCG00005967
AMCG00005939 mRNA downstream 222919 12922400 ~ 12949967 (-) True AMCG00005939
AMCG00005943 mRNA upstream 58946 13240482 ~ 13244787 (-) True AMCG00005943
AMCG00005944 mRNA upstream 66218 13247754 ~ 13250688 (-) True AMCG00005944
AMCG00005945 mRNA upstream 97767 13279303 ~ 13284728 (-) True AMCG00005945
AMCG00005924 mRNA upstream 203647 13385183 ~ 13387394 (-) True AMCG00005924
AMCG00005952 mRNA upstream 212122 13393658 ~ 13396684 (-) True AMCG00005952
TU195614 other downstream 318083 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 500428 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 1818253 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 1833772 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 1847819 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 986554 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 1155355 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 1327697 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1498261 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1601095 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile