RNA id: AMCG00005948


Basic Information

Item Value
RNA id AMCG00005948
length 1944
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00005948
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13169077 ~ 13171020 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGGTAATGAATCACTGGGCGCCTCAGCCGCCAGTGTGCCAGTCTCCCCGCCGGTGCCAGGCAGCCATGATGAATGGGCACTCGAGCCGGTGACTGGGAGCGTGCTGGGCTACCAGGCTTCTGAAGAAGGCCGTGTCACGGAGCTAATGGACAGTGAAGGCCCCACTAACGAGGCTGTAACCACGGCCACTGCTATGCTGGCAGCCAGCCTGGGAGGGACCTCTGCTCCCACAGGGGACGTGGCATTGGATTCATCTGGCGAAGAGCCATCCACTTTGGTAGTGGAGGAGACCTACACAGCCCACGCCCCCAGAGATTTAGTTCCAAGGCCCTCCGAGTCCCTGGAGGCCAAGAGGGCGACCGTGGAGCTCCTAGCGGTCCTGTCCTCCAGCGACAACCCGGAGAACTATTCTGGAGAGGGCAGGGATCCGGAGGAGGCCTCCCTGCGTCTGGTGACATACCGACTCCCTGAGGAGACCAGCCACCAGCCGCCCAGCCCGGTGTCCACACAAGAAACCAAAGCAGAGAAGGAAGTTGATGGCAGCGGTGCAAGTGATCTTCCAGGGGTTGGGCTGCATGGAACTCATGGTCCCAGCGGTTCTACTGCCACCACAGGGTTATCTCCTGCTGCCACCAGCACAGACATCCCCTTTAGGACAGACCCCTGGGGGGACGCGAGCCTAGCACCGACACACAGTGTTGTAGATCAACACACAACTGTCACGGTGCAAGAAGAGACCCATTTAACTACTCTTCCCAGTGCCAACAACAGTGAGATGGGGATACAGCAGGAGGCCACGGAAGACAAGCTGAGTGTGAGAGGCACTGCTCTGCTTTCTGCATCCACCACAGAGGGGGCCGCGTTGGTCTCAGTGGGCAGCGCACTGGAAGCAAAAGGAGAAATAGTGTACGCCCTGCATCCGACAGAAACCCAGTCAGACACAGCAGAAACCAAAGGCACGGCACTGGGGACGCCCACTACTACAGACGTCTTCCTTGTGACAGACAGAGCACCAATGTTGCCCAACACGGTGGCGATAGTAAACCTGCATGACCTAAAAGAGTCTGAGATTGCAACTCAGCCCCAAGCAGTGGCCACGACTTCCAGTGTGTGGGTCATGTCCACTGGGTCAGGGTCCACTGTCCCCATGGTACCTCTGGCCACCATCAGAACCTCCACGACTGATTCAGTGGATGAGCCCTCACCCCCTGCCATGACCAGTTTGGCCCCTGCAGTGGTGTTGACCACCCAAGGGCAGCTTCCACAAACCGAGGCACTTTATGACCAAACCACACACCGTACAACCCCCCAGGAGTCTCAGTCTGAACTCCAGCCAGCTGCCACCACCGAGGGTTCCTCTCAAGAGCACCGTGACTTCACCAACGTGCCGTCCATCTCTATCGCGTGGTCGACTGAAAAGGTGATGCAGGGGAATACGGAATCGAGCAACACCGACGCCCCTTCCTACAGTCCCTCACCCGTGTACACGCTGTCCAGTGCAACCGAGACCTCTTCTGCCCCCGCTCAGTCCACCGTACGGGGATTGGACTTCCAAGACTCTGTAGGAGAAGCCGAGACCAACTCCATGGTCCCCAGGTCCACAGATGGGGCCCCAGCGGGGGAACCTACCACTGCTGTCTCCCCTGTAGAGATGTCCGTGGTCCCCGAAGGTGAACCATCTCTGGGCACTGACCGCCCCCACACAGAACTCCCTGGCACACAGCTGCCCACCACAGCAGCGGTGGAAAGCTACAAAATTGGAGTAACACAGGGGTCCCATCTGGCAGACTTCGAGAACGTTACCGCATCCAATCACTCTGAAGCCAACACCTCATCATCGGTAGCAATGAATGAGACTTCAGCCAACAAAACCACAGGTAGAAATTACTCTCATTTGTCCATTATCCATCCTTACAGGGTTTACCTTGGTTTTAATTGA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195763 lncRNA downstream 36538 13123557 ~ 13132539 (-) True AMCG00005946
TU195753 lncRNA downstream 61010 13107812 ~ 13108067 (-) True G155400
TU195743 lncRNA downstream 61584 13079485 ~ 13107493 (-) True G155391
TU195718 lncRNA downstream 130525 13036459 ~ 13038552 (-) False AMCG00005966
TU195738 lncRNA downstream 135669 13028204 ~ 13033408 (-) True G155390
TU195785 lncRNA upstream 81102 13252122 ~ 13252489 (-) True G155426
TU195788 lncRNA upstream 95943 13266963 ~ 13267162 (-) True G155429
TU195790 lncRNA upstream 102620 13273640 ~ 13274693 (-) True G155431
TU195881 lncRNA upstream 293435 13464455 ~ 13465588 (-) True G155502
TU195883 lncRNA upstream 295950 13466970 ~ 13484019 (-) True G155503
AMCG00005946 mRNA downstream 12759 13131727 ~ 13156318 (-) False AMCG00005946
AMCG00005966 mRNA downstream 117358 13036424 ~ 13051719 (-) True AMCG00005966
AMCG00005967 mRNA downstream 143460 13022361 ~ 13025617 (-) True AMCG00005967
AMCG00005939 mRNA downstream 219110 12922400 ~ 12949967 (-) True AMCG00005939
AMCG00005936 mRNA downstream 261925 12896675 ~ 12907152 (-) True AMCG00005936
AMCG00005947 mRNA upstream 1866 13172886 ~ 13181536 (-) True AMCG00005947
AMCG00005943 mRNA upstream 69462 13240482 ~ 13244787 (-) True AMCG00005943
AMCG00005944 mRNA upstream 76734 13247754 ~ 13250688 (-) True AMCG00005944
AMCG00005945 mRNA upstream 108283 13279303 ~ 13284728 (-) True AMCG00005945
AMCG00005924 mRNA upstream 214163 13385183 ~ 13387394 (-) True AMCG00005924
TU195614 other downstream 314274 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 496619 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 1814444 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 1829963 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 1844010 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 997070 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 1165871 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 1338213 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1508777 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1611611 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile