RNA id: AMCG00005952


Basic Information

Item Value
RNA id AMCG00005952
length 1344
RNA type mRNA
GC content 0.64
exon number 7
gene id AMCG00005952
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13393658 ~ 13396684 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCCAGGCGCATCACGCAGGAGACCTTCGACGCGGTGGTCCAGGAGAATGTGGACGAGTTCGGGTTGGACCCGGCCGAGGCGCTGGCAGAGGCCGTCGAGCAGTTCGAGTCGCAGGGTGTGGACCTCACTAATATAGTGAAGGCCGTGCAATCAGGAGCTTCAGAGGATGCAAAAGACAATCAGACACATACTGTGCTACAGATTCTGGAATCTCTGCGGGGCCACGTGGGCACTGCCAACGTGGACGGCATGCCGGCAGACCTGAAGCGCTTCACAGAGCAGTGCAAGCTGGGCTTCGCTCAGCGCTACCTGGCCGCCCAGAAGGACGCGTATCCCACGATCCTGGCGTGCTGCAGGAAGGTGGATGGGGAGAAAGCGTCTCTGCTGGCGGCGCTGGATGCACTCTCGTCTCTGACAGACGGACAGCCGGACCTGCTGGATGCGGGCGGGCGTGAGTTCCTGATGGGCATCCTCAGGGAACACCCGGACGACCCCGCCGTGACCGTCCTGGCGGTGCGCGCGGTGCGGCACTGCTGTGTGAAGCACGAGCAGAACAGGCAGGATCTGGTGAAGGCGGGCGTGCTGCCACTGCTCACGGCCACGGTGTCGCGGTACAGCGCCCAGCCCGAGCTGCTGTGCGAGGCCTGTGCCGCGCTGAGGGTCATGACCTTCGACGACGACATCAGGGTCCCCTTCGGTCAAGCCCACGACCACGCCAAGATGATCGTGCTGGAGAACAGCGGGTTAAAGGTCCTCATCGAGGCGGCCAAAGCCCATCCAGACAACACCAGTGTGCTGAGTGAGCTGTGCGGCACGCTGTCACGCCTGGCCGTGAGGAATGAGTTCTGCCAGGACATCGTGGACCTGGGGGGGTTAACGTTCATGATGAGCCTGCTGGCCGACAGTCTGGATCACCAGGACCTGGTGAAGCAGGTGCTGAGCGCCCTGAGAGCCATGGCGGGCAACGATGACGTGAAGGACGCCATCGTGTGTGAGCACGGTtgcgcctctctctctgtcctggcTCTGCGCAAACCCAACAACTGCCGGGTGATCGCGGACAGCGGGGGGCTTCTGGTGGCGCTGCAGGCCATGAAGGCTCACCCGAAGGCACTCAACGTGCAGAAACAGGCCTGCATGGTGCTGCGCAACCTGGTGTCTCGGACCCAGGAACTGTGTCCGGTCATCCTGGAGCTGGGCGCGGAGCCTCTGATCCGGCAGGCCCTGGCCTCGCACCAGGACTGTGGCGACTTGGCGCAGGCTGCCCTTCGAGACCTGGGCTGCGAGGTGGAGCTGAGGGAGCTGTGGACTGGCAAGAAGGGCAGCCTGACCCAGTGA

Function

GO: NA

KEGG:

id description
K24166 ARMC6; armadillo repeat-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195790 lncRNA downstream 118965 13273640 ~ 13274693 (-) True G155431
TU195788 lncRNA downstream 126496 13266963 ~ 13267162 (-) True G155429
TU195785 lncRNA downstream 141169 13252122 ~ 13252489 (-) True G155426
TU195763 lncRNA downstream 261119 13123557 ~ 13132539 (-) True AMCG00005946
TU195753 lncRNA downstream 285591 13107812 ~ 13108067 (-) True G155400
TU195881 lncRNA upstream 67771 13464455 ~ 13465588 (-) True G155502
TU195883 lncRNA upstream 70286 13466970 ~ 13484019 (-) True G155503
TU195898 lncRNA upstream 171895 13568579 ~ 13578799 (-) False AMCG00005977
TU195906 lncRNA upstream 267380 13664064 ~ 13694102 (-) False AMCG00005971
TU195905 lncRNA upstream 269050 13665734 ~ 13698534 (-) True AMCG00005971
AMCG00005924 mRNA downstream 6264 13385183 ~ 13387394 (-) True AMCG00005924
AMCG00005945 mRNA downstream 108930 13279303 ~ 13284728 (-) True AMCG00005945
AMCG00005944 mRNA downstream 142970 13247754 ~ 13250688 (-) True AMCG00005944
AMCG00005943 mRNA downstream 148871 13240482 ~ 13244787 (-) True AMCG00005943
AMCG00005947 mRNA downstream 212122 13172886 ~ 13181536 (-) True AMCG00005947
AMCG00005953 mRNA upstream 65532 13462216 ~ 13462560 (-) True AMCG00005953
AMCG00005976 mRNA upstream 134192 13530876 ~ 13533884 (-) True AMCG00005976
AMCG00005978 mRNA upstream 164388 13561072 ~ 13567481 (-) True AMCG00005978
AMCG00005977 mRNA upstream 171783 13568467 ~ 13583351 (-) True AMCG00005977
AMCG00005971 mRNA upstream 272596 13669280 ~ 13693392 (-) False AMCG00005971
TU195614 other downstream 538855 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 721200 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2039025 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2054544 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2068591 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 771406 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 940207 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 1112549 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1283113 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1385947 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile