RNA id: AMCG00005955


Basic Information

Item Value
RNA id AMCG00005955
length 2691
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00005955
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12213629 ~ 12220522 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGCAGAGGCACAGTGCTGTCATCCATGTAACGCTGCTTCCTGCGCATTAGGACTAGTCTGCTATTATGGCTAAATTCACAGTGTTATTTCTGTACCTGCTGCAAGGTACGGCTCATCTCATAACGGGACAGCAGCAAGTGCCAAGGGCGCGGGTCGGGCCGTGGAAGCAGAAGATCCAGTGGGAGAATAACGGCCGGGTGTTCAGCTTATTAAGCACCGGCTCGCAATACCACCCGCCAGCCTTGTCGCCGGAGAGAAGCAGGACAGCGCACGTCTATCTGAGCACCAACGAGGACTTACACAGCCGCCCCGCTGCTGGAGCGCAGGACAGGGGGTCCGAGACACAGGACAACCACCCGAGATCGGGATCTGGACTCAGGTCATCAGGCCCAAGTTTACCAGGTCCTGGATCAGCACCACCAGTGGCACTTGTGTCTGAATCCGGGGTGCTGGGTGCTGATTCGGGTCTCTACATGTTGGCCAGCAGTCGCACCTCGCAGCAGCCGGAGCAGTCTGTATTGGCCCCCCAGGCCAGGCTCTCCGGCTCCCCCGGTGCGCGTCGCTTATCTCCGGGGCCCCGTGCAGTGGCCAACATCACCACAGCGGGGCTCCTTCCCGAGTTCTCCGGCAGTGGGGTGCCTAGAGGAGGCAGGGATCCCTCTGTCCCCAGGCGGACTGCAGTCACCCTGCCGGAGAGCCGTGCGTCTGTGTCGGGGTCCTCCAGGAGGGGGGAGACCGGCAACAACATCCCCGATGCGCCACCAGCGCGCATCCAGGACAGGAGAAACAGCGGGCGGCCGGGGGGTGCTGGCACTGGCGTCCAAAACGTGGACTCGGTCACTGTGGACGGAGATGTTCTGCTGTATCATGTATCCCCGACCATAGTCCATGATAACTCCGACAGGGAAGAGGGGGGATCGGAGTCCCAGCAAGCCCGAAATGCAGAGGACATGGCGGGGGACGATCCTCGGAATCCCTACAAGAACAGCAGGAATACAGTTTTCTACAACACGTACCCCTCTTCCTCGGGCAGCGGGCGCCCTCGGACCCGGCCGCGCCGCCCCCCAGTCAGCGGGTACGGGACCGGCTACTTCCACAACGGACTGCCGGACCTCGTCCCTGACCCATACTACATCCAGGCTGCCACTTACATCCAGCGAGTCCAGATGTATGCACTGCGGTGTGCAGCCGAGGAGAACTGCCTGTCCAGGTCAGCCTATAGACCCAGTGTCAGAGACCTCCACTATAGGGTCCTGCTACGGTTTCCCCAGAGGGTCAAAAATCAAGGGACAGCAGATTTCCTTCCTGTCAAGCCAAGGCACCAATGGGAATGGCACAGTTGCCATCAACATTACCACAGCATGGATGCCTTCAGTAACTACGACCTGCTGGAGGTCTCTAGTGGCCGCAAAGTGGCGGAGGGCCACAAGGCCAGCTTCTGTCTGGAGGACACCAGCTGTGACCCTGGCGTACGCCGACGCTATgcctgcacagcacacacacagGGATTGGGTCCTGGTTGCTATGACACCTACAATGCCAATATTGACTGCCAGTGGATCGATATCACAGACGTGCCACCAGGGAACTACATCCTTAAGGTCACAGTGAACCCCAGCTTCCAGGTGCAGGAGTCGGACTTCTCCAACAACATAGTGAGGTGTGACATCACGTACACCGGCTCCTACGTGTCAACGAAGAACTGCAGGATAACAGGCCATTAAACAGAGACATTGCAAAGAGGAGGAACCATTTTGTACTGTTTAAAACATTGATATTGGTGGCCACATTTTCTACAGCATGCAAGTCCCATGCGTACTGAGGACTGACTAAGTACTGACCTTCTCTCCAGATCACTTTTTATATAACAAATCAGATTGGtcctcagcagcagcagaaataaCCGATCGaaagttattttatgtattcatgcaCAAATGTATGTAAGTAGCCCCAGGTTTTGTTCATGTTATGTTTTTGGTGTTACTGTtaaagtactgtattttttatctTAGAtcgcagttgttgtttttttgtagcgGTCTCCTATATATTGCTGTAGTTTTCTCACCCCCTGTCCTCTTCATCAGCAGTAGACTATAATATAAGTTGGGATTCAATAGTTAGAACATATCTAAGGAACAGAAGGATAAATGTCAGGTGCAATGATGAGCAAGCATCATCTAGAGGTGAAGAAATCCGTTTATAGCTGACATAAGGTCTGCAATTAAGCTGCCTCGAATCCAGAGGTGTGTGATTTTGCTAAACATTgtgattgtaaatgtaaatgtagcaaATTACTAGTTGAAAATGTACTGAACCCCTACctacaaaaccacacacacacaaggactGCCTTGGGAAAAATGCCAATACAGATTTGAAAAagtatgtttgtatgcatgtatgtatgtatgtatgtatgtatgtctgtctgaTTTGTTCTACATACACTTTAATGAATCAGGATCAGAACTTGAAGCCTTTCTTGAGAAATAACTTTAAAATTCCTTGTGGGCAGATGTTACTCAGCATGTATGAAATAATGTAACTATGAGctgattttttgtattgctgtatttACAATAAACTTGGTATTTTTGAGAGAAGAAGGAAACATTAAACTTAAAATTTGTATTCTGTCACACAATcaccaatacaaaaataaatacataaataataaatctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195263 lncRNA upstream 5675 11970824 ~ 12207954 (+) True G155017
TU195305 lncRNA upstream 10157 12201736 ~ 12203472 (+) True G155053
TU195266 lncRNA upstream 226705 11984663 ~ 11986924 (+) True G155018
TU195210 lncRNA upstream 301529 11906641 ~ 11912100 (+) True G154979
TU195135 lncRNA upstream 573703 11639686 ~ 11639926 (+) True G154917
TU195472 lncRNA downstream 226958 12447480 ~ 12447684 (+) True G155182
TU195509 lncRNA downstream 324700 12545222 ~ 12585408 (+) True G155207
TU195499 lncRNA downstream 332903 12553425 ~ 12554767 (+) False G155206
TU195507 lncRNA downstream 390661 12611183 ~ 12631371 (+) True G155206
TU195624 lncRNA downstream 670564 12891086 ~ 12891396 (+) True G155304
AMCG00005958 mRNA upstream 22982 12178240 ~ 12190647 (+) True AMCG00005958
AMCG00005892 mRNA upstream 42315 12170080 ~ 12171314 (+) True AMCG00005892
AMCG00005894 mRNA upstream 47773 12147492 ~ 12165856 (+) True AMCG00005894
AMCG00005902 mRNA upstream 145577 12027681 ~ 12068052 (+) True AMCG00005902
AMCG00005904 mRNA upstream 196238 12013528 ~ 12017391 (+) True AMCG00005904
AMCG00005954 mRNA downstream 5340 12225862 ~ 12235823 (+) True AMCG00005954
AMCG00005957 mRNA downstream 30510 12251032 ~ 12255803 (+) True AMCG00005957
AMCG00005956 mRNA downstream 36083 12256605 ~ 12269763 (+) True AMCG00005956
AMCG00005915 mRNA downstream 217766 12438288 ~ 12443887 (+) True AMCG00005915
AMCG00005921 mRNA downstream 271119 12491641 ~ 12493573 (+) True AMCG00005921
TU195202 other upstream 307785 11903386 ~ 11905844 (+) False AMCG00005895
TU195111 other upstream 608354 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 888555 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 1127618 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 1203275 11007544 ~ 11010354 (+) True AMCG00005840
TU195527 other downstream 471294 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 472238 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 476826 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 485969 12706491 ~ 12707437 (+) False AMCG00005987
TU195534 other downstream 491256 12711778 ~ 12714013 (+) False AMCG00005984

Expression Profile