RNA id: AMCG00005965


Basic Information

Item Value
RNA id AMCG00005965
length 5687
RNA type mRNA
GC content 0.54
exon number 31
gene id AMCG00005965
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12969874 ~ 12995480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCAACAATCTATACGGAAATGCCAACCCCATGTCCCGGGAGACACGGCTGTCTTTCAGCGGCTCCCTCATTGCCGTGACTTTCCCCGGATACAATGTGTCCGTTTTGAGCAACTCTGAGCAACTTGTTTCCTGCCGGACAGCGACACACAGGTGTGCCAGCCAGGGTCACGACCTCCACTGCTTCACCGAGTCCGCAGATAAGTTGGAATCCGGTGACGCCAgctcgAACCCAGAAATGGAGGAGATGACAATATGGGAGCAGTATACCATCACGCTGAACAAGGATCCCAAGGTGGGTTTCGGGCTGGCTATAGCGGGGGGACGGGACAAACCCAGTTCGAGCGGAGACATCTCGGTGGTGATTTCAGACGTGGTGAGGAATGGGCCAGCTGCGGGGAGGCTGCACACCAAGGATCGAATTGTCATGGTGAATGGCATCTCCATGGACAATGTCACCTCTAACTTCACCATCCAGCACCTCAAGAGCTGCGGCAAAACAGCCAATATTACGGTGAAGAGGCCGCGCAACATTCAGTTGCCCGTTACCACCGCCAAGCCCTTGGCCTCTCGCTCGGCCTCCCGCAACAATGTCGTGGAGGACTTCCCCTCCGAGCCACGCACTCGCCTGTACTCCGACTCCGGTAGTGACCGCAGCTACGGCCGCACTAAGGGCCGCAAAGAGGCTGCGGTGCGCAGCTCCACCCCCGACCGCAACGGCCACGCCTTGCCTCTCATGTCTGGGTTCAAGAGGCTGCCCAACCAGGACACCATGAACAGGCCCATCCGCGCAACGCTCCTCAAAAAGAAGGCCTCAGAAGAGTACGGCTTGAAGCTGGGCAGTCAGATTTTCGTAAAACACATGACCCCCACTGGACTGGCAGCCAAGGAAGGCACTCTACAAGAGGGAGACCTCATCTtgaagATCAATGGCATGACCACCGAGAACCTCTCCCTACTGGACACCAAGCACCTGGTGGAGAGGTCAGAGGGCAGGCTGTCCATGGTGGTGCTGAGAGACGACCGCCAGTTCCTGGTTAACATTCCCGACATCGAGGACAGCGAGCCAGAGAGTGACGACCAAAGCAGGGGGGACAGCTCAGAGTTGGAGGACATCTCAGATCTGGATTCCCACCCCCGTCCCACCAAGAAGAAACAAAGGAGCTCAGAGAGGAAGACTCGCAGAGCTCGTTCTGAGGCTGCTGCCCTAGAGTCTGTCCCTGTTGGCAGAGAGGCTTCAGACTCCGAGTCAGAGCCCAGCCGCACGCCCCTCCCCAGACGGGACATACCTGACAACAGAGCCCCCCGGAGCAAATACAGAGTGCTCCCCGAGGCCTCGCTTCCCAATCCCCGTGCTTCTCCCCTCGCTAACGCACTGGACTCTCCTCGCTGGGGCACCGCCTCCAGACCTCCTTGGAAAGAGGTTTCCGAATCCGATTCGGACCGCAGCCCCTCGCCCCCGGTGCGGCAGGACACTCCCAACGTGAGGGGCAACCTGGACCGATACAGAGTTCCAGAGCCGACACAACTCAATCTGCCAGCatcgcccctctctctccagcaggaCTCCTACCGACGAGGACCCTCTCTTGTCAAGCCTGCTCCACAAGATCCTTCGGACTCCGAGTCGGACCCTGGCTCGTCGAACCCCTCCAAGTGGGACACCTCCGAGACGACTAAATATGCCATTCTTCCAGAAGTGTCGCAGCCCCGAAGTCATGGCCCGCCCCCCACAGTGGAGCCCCCTCGCTGGGTACAGCCCTTGGTAGTACCCCTTGAGCAAGaCTCGCAGTCGGATGACAGCCCTTTGCCAAGCCCCAGGCAGGACACTCTTGAGAGCAGGGACCGATACAGAGCCCCTCCGGACGTGCGAGCGCCCTCCGTCTCTCGCAGTAATGATTCCACTCGCTACGGTCTGTCCCCAGCCAGGCCCACTATAGAGGACTCTTCAGAGACAGAGTCCGAGCGCAACTCCTTGGTGCCCGGGAGCACGGATTACCAGGGCAGAGACCGGAGTCTGGGCAGCAGCAGCCTTATACCACCGTCCAATGGCATGATCCGCCCAGGAGTGCAAATGATGGATGTCCCAGAGCTGCACGCCCGGAGAGAAGAGGAGCCAATCTATTCGGTGCCCCCAGACTCTCCTCTCAAGAGAAGAGCTGGATCAGGGTACAGCTCAGACCAGCGGACGGTGGAGTTCATGAAGGAGAACAGCATAGGGCTGCGGCTGGTGGGGGGCAACGATGTGGGCATCTTTGTGGCGGGGGTGCAGCCGAACAGCCAGGCACATCAGCAGGGCATGAAGGAAGGGGATCAGATCCTACAGGTGAATGAAGTTGATTTTGGACACTTCACCCGGGAGGAGGCCGCCATGTTCCTGCTGAACATCCGTCGAGGGGATCATGTCATCATAGAGACGCAGAACAAAATGGACATCTACAGGAAGGTCCTACAGTCCAACCTGGGGGACTCCTTCTACATCCGCACGCACTTCGACCAGGAGGCCGAGGGGCCGAGCGGCCTGAGCTTCACGCGGGGGGAGGTGTTCCGCGTTGTGgacacaatgcattgtgggaaactGGGCACATGGCTGGCGGTGCGCATGGGCAACGACCTGCACGAGCTGGACAAGGGCACCATCCCCAACCTCAGCAGGGCAGAAGCCATTGCCAGCTTGGAGCAGGCCCAGCGGAGCAGTGGGGGGTCTTCCCAGGTGTCAGGGCCCCGGGCTGAGTTCTGGAAGCTACGGGGCCTGAGAGGGGCCAAGAAGAACCTGCGCAGGAGCCGAGACGACCTGTTGCAGCTGACCATCCAGGGCAAATACCCGGCCTATGAGAAGATCCTGCTCAGAGAGGCCACTTTCAAGCGTCCCATTGTCATCCTGGGTCCTCTGAATGATGTGGCCATGGAGAAGCTGGCCAGGATAAAGCCTGATGAGTTTCAAATGGCTGaGATGGTTCCTCGCAGTGGGACAGAAGGCTCATCCTCTGTGATCAAACTGGAGTCCGTGAAGCGGATCTCTGAGCAGAACAAGCACCCCCTGCTGGACATCACCCCCACCGCAGTGGAGCGGCTCAACTACATCCAGTACCACCCGCTGGTGCTGTTCCTGGACCCGCACAGCCGCAAGGACGTGAAGGCCATGAGGAAGCGGCTCTGCCCCGACTCCAACAAGAGCTCCCGCCGGCTCTACGCTCAGGCTCTGAAGATCAAGAAGTACTGTGCACACCTCTTCTGCGcccgCATCGACCTGCAGCCCGGCTCAGACATGTGGTTCGATATCGTACAGGACACAATCCGCAACCTGCAGTCCAAGCCGGTCTGGGTATCAGAAGTCACGCTTGAGGGCGgcgaggcggaggaggaggagcgggaGCTGGACGCCCTGGGCCGCACGTACTCCTCCGACTACCTGAGCTGCACCAGCCGGGCCGCCAGTGACTATGAGAGCACGGATGGAGAGGGCTTCACGGATGAGGAGCTGGACGAGCCCCCCGGGGAGGCTGGGGGGCGGACGCCATACATGGGGGTGTCCCTTGCCCGCTCCTCGGAGCCGGCCCTGGAGAGGGACAGCTCGGCCTCTGACCGCGCCTCCAACGGCCCCCGAGAGCTGCCACCAATCCTGCATGTCCCGGAGCCCCAGTCCCGGCTGCGCTCCCCCGGCCTCGCAGACCCCCACGTCCCCTCGCCCGTCAGCTTCTCCGACGACTTCTCTCAGTACAGCGACTCCGAACCCCCAGACTTCAGGGCCCCGAACCCCCCGTCTCCTGTGACGACCCTAGAtcccccacctccacctccgGCTGTTCAAGAAGAACTCAGTGAGCCCCGCAGAGCCGAgcctcaggaaaacaaaccgtCCCAACAGAAGCTGATTGTCCTGGCCCACCACGAGGCCTTGCAGTGGAGACGCTCTCAGATCCGAGGCAGTGACAGCTCAAACAACGACGACAATGACGACGCGGATGACATCGACTGGGGCCCGGCCACTGAGCTCTAGGGCCCAGCGCTCCTGCCGGCACAGCGCTGAGGGGCGGAGGGGACTGGAGGGTGCGGTCTTCTGGGACTGCAGCGGAATATACCTGTAAAAAAGACCAACGCCaaagaaattataaatgcaGGCCCGCCGAGCTGAGGAGCTGTGAGAAAACGACTGCCCCTGGTCTGTTTACAGCATGGGCACCTGGGTGTCTGTTTCAGCTCCGGGGATGATCTCTGTAAGGCCTTGGGAAGTGCCTTATTGTACTAACagactgtatatatttttggggggtCCAGAATTGAAACCCATCTGTTCCGCAAGAACTTATGACATCGTATTCGATCATGTGACTCGGTCTTTGGAGTCGCTGCATTTCTGCCATCCAGGATTTTGTCGTTAAGTCTCTTGGATGATTCCTTGTGGGATTGTTTTCTAACCGGTGGCGGCTGCtgtggattgtgtgtgtttttattgcagtgGCAGCTCTCCGCTGGACTCCCAACAGCACAAACGCATTCTCAAGtaaagtgtatattttttattggttATACTTttaatcccttttttttttaaatccacccCTGTAATAAATGGTATCTTGGTGGTGGCAAATTTCAGCCTAGTGAAAAACGGTATCCCAGGAAAGACAATTCCTACCTCCTCATAAATAGCTGTTTATTCCGTGAGTAGGCGTTAAAGGATACGATAAGtatttgaacatttaaacatatcaggtttttatagatgtgtgtgtatgtatataaaacgGTATAAATTAACAGTATCGCGGTGGGGaggcacatttttatattaaagcaTGTGCATTATGGGTGAAACGACTTGTGCAACTAAAGCATGCTTGAAAACCCTTGCTCTGCCCACTGTGCTCTAGAGATCAGTCTGTATGAATGTAAACCAAACCTAATGACACCCTGACCGTTCTGGCTGGTCTCAGGCTTGTTCTttgtgatgtgttcatgttctATTTCCCTACCAATGGctccacattttttaaaaacgcaagttaaaaatatatatatagcagttttttaatattccagtttgtttattttttttaaatcttgcacccttgctatgttttttttttatataatggttTACATGTTGCAGATAAAAGTGAATTATGTTTTGTGCTGATAATCATTATtgggctttgtttttctctgatttTATGTGCCAATAGAGTAAATATTTaagtttgaattaaattaagtaaagcCCCTTTGACATCCACAGACTCGCACTGCAGTCTAATTTTGAATATGATGTGTGATTTCTCTCTTGATGTGTGGAAATGCAGTCGTGACAGACATTTGCAATGCTATTACTCTGTACTGTAGTAGCTGCCGACTACCGCTAGTGGGCAGTAAAGCAACCTTGAATGAAGCGATTCTTGACAAAGTTGCATTCATTTATAACATAACATGAAATCCCTTTTGTTTAATCTCTCGGATTGTCATTGTTAATTTCCCTGTTGCCCCTGTTAATTAAAAGCATACAAATCAATACGGGACGGTTTCATGTCTGTGTAATCCTTTGCACGCCTGCTTTTAATATTCAGATCTATACCATATGCTTCTCTAAAAACTTTAACTGATTTTGTAAACTAAATCGTGGCATCCTaactcattaaaaataatatttactacTTTCCCAGTTCCAAAAGCTTTGTAAAAGGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195616 lncRNA upstream 32755 12920100 ~ 12937119 (+) True G155297
TU195633 lncRNA upstream 37999 12931316 ~ 12931875 (+) True G155313
TU195630 lncRNA upstream 58943 12908694 ~ 12910931 (+) True G155310
TU195625 lncRNA upstream 74422 12894120 ~ 12895452 (+) True AMCG00005935
TU195624 lncRNA upstream 78478 12891086 ~ 12891396 (+) True G155304
TU195692 lncRNA downstream 26854 13022334 ~ 13023036 (+) True G155350
TU195693 lncRNA downstream 29140 13024620 ~ 13025468 (+) True G155351
TU195696 lncRNA downstream 38607 13034087 ~ 13035794 (+) True G155353
TU195698 lncRNA downstream 38607 13034087 ~ 13036360 (+) False G155353
TU195699 lncRNA downstream 40997 13036477 ~ 13039375 (+) True G155354
AMCG00005935 mRNA upstream 75241 12894267 ~ 12894633 (+) False AMCG00005935
AMCG00006062 mRNA upstream 130210 12785301 ~ 12839664 (+) True AMCG00006062
AMCG00005986 mRNA upstream 227983 12739471 ~ 12741891 (+) True AMCG00005986
AMCG00005985 mRNA upstream 231350 12736127 ~ 12738524 (+) True AMCG00005985
AMCG00005984 mRNA upstream 255303 12711862 ~ 12714571 (+) True AMCG00005984
AMCG00005963 mRNA downstream 104 12995584 ~ 13020294 (+) True AMCG00005963
AMCG00005964 mRNA downstream 33099 13028579 ~ 13033408 (+) True AMCG00005964
AMCG00005925 mRNA downstream 101589 13097069 ~ 13107823 (+) True AMCG00005925
AMCG00005926 mRNA downstream 115364 13110844 ~ 13117181 (+) True AMCG00005926
AMCG00005942 mRNA downstream 242842 13238322 ~ 13240049 (+) True AMCG00005942
TU195534 other upstream 255861 12711778 ~ 12714013 (+) False AMCG00005984
TU195532 other upstream 262437 12706491 ~ 12707437 (+) False AMCG00005987
TU195530 other upstream 271344 12697348 ~ 12698530 (+) False AMCG00005987
TU195527 other upstream 273555 12691816 ~ 12696319 (+) False AMCG00005987
TU195694 other downstream 30284 13025764 ~ 13033408 (+) False AMCG00005964
TU196052 other downstream 1102324 14097804 ~ 14098696 (+) True G155637
TU196053 other downstream 1112693 14108173 ~ 14109870 (+) True G155638
TU196155 other downstream 1380515 14375995 ~ 14383580 (+) True AMCG00006009
TU196402 other downstream 2107976 15103456 ~ 15105567 (+) True AMCG00006092

Expression Profile