RNA id: TU195718


Basic Information

Item Value
RNA id TU195718
length 2094
lncRNA type sense_over
GC content 0.47
exon number 1
gene id AMCG00005966
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13036424 ~ 13051719 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCCCCCTGGCCCCAGCCCAATCGGCGCCCTCGCTGCCCAACGGCCACTGCAGCGGCAGCGACGCCATCAACGTCCGCGAGGTCCTGGACATCATGCTGCGGACCAACCCGGAGCGCCAGTCGGTCATCCAGTTCCGGCTACCCAGCGAGGAGCCTCTGGGTCGGGGCGAGCTGGGGGTGGTGGGGCAGCTGTGTGGCTGCAGGGAAGCGGGGCTGCCGTGTTTGCACGCCCGGGCACAGTGGGATTGCAACTAGGGACCGGAAACGGGAATCAAATCAAGTCTGACGGAAAGACATCTGTAATTCCTGCGGGTCGAGTGCCCGGCAGGACCAGGGAGGCCCATGTGGCTTTCGGAGTCGACCCCAGAGACCGGGAACTAAACTAGGGTCACGTTTTCTTCAAAGTGCTGGTATTTatcatgaatatatatttttttttatttgatttgtaatgAACTTCCTTCCTCACCCCCTGCCCCAGTGTCTGTCCCGACAGCAGGGTCGTCGCTTTGGGTCCGCAGTATACTGTTCTGACGCTCGTAGCCTCGAGAGAGAGAAGTTTCAGTCTAGATTTCAGACACGAGAGAATCTTTCTGAAATGCATTGCTTACTGTGGAAGCAGAATACAGAGTTCAGTGGGCGTCTGAAATCGGAGAAAGTCACGCtgcttgtttttaaacagtagggCTTTCTGTACCagacctgtctgtctgtctgtctgtctgtgtgtgtgcgtctgtccgGGAGGGATAGGACTGTGCCCCTTAGACGTGTAGGAGTGGGTGAGATGTCTGTCGGTTTGAAACTGTTTTAGTTCTTAGTCTTCAAGGCAAAAGAAAGATGTGCTTTTAAACTCCCTCTCCCGTCGGTCTAGTTCACCTGTCTGTGCTTGTTGTCCCCGACGCTCTCCCGTCGAGTTTTGCTCTCTCGTTTTGGTCGGACTACGTCGCCCCCTGCTGGCTAGAGAAGGTTGAGCAGGATATGATGTTAAAAAAGGATTAAGAGCCATAACGCAACCACAATACAAGtccccccacctcctctccGCACTGTTGCGAACTCCTGTCCAAAATGCTTTAGTACGCTTCGGATTCCTCACGTGCGCGGTGTAGACTCAAACTGGACTAAACCCATTTCTCGTGTTCAGAACCAAACCGAACCGAAACGCAAGTGGGACGGAAGTGCCCTCTCGTAATGCAGTCACGCGTGAGCCTGACCTCGGCGACGGCGCGAACACACGTGTGATGCAAAGAAGCAGTATTAAACGTCCCAAGAAAGCAAACCAATAAACCGAAGTTGGATGCACATTGAACCCGACCCGTGTTAAGGTCTTCATACCCAGTAGGTTTAGCCTTACCTCCCATCAGTACTTCTCCACAGTGTGGGgggataaataaatcaataacagcCTCCTTTTTCTCACAGTGCCTTTGGAACATGCTAAGAAATGCAGTCTTTTACTATACTTGTATATATTTCTACTGAAATCAGTGGTATCTTATTTATTGTAGTCGATGTTTTGACACACTAGTGTGTCACCTGACCTGCTCTGCACTGTCTCCGCAGCACCTATCTAAAACCTCAGCTCCTCACTCGCGCTTGGTGGTGAATGGAAACCCAAGCCAAGATCTAGTATTTCATCTCCTTTTTGAAACCTAAAAGAAGGCACACAACTTAGCAATAAAGCAACCGACCTGATAAAGAAAGAGTCAAAGTACTGTTTACGCTTCGAAGAGAAATAACGTCACTTGTTCACAGTAAAACGAATCTCACGACATCACTTTTTTGCGAACGAGTCTCACCTGCTGCAAAGTCACAAAACTTTTGtatagaaagaaacagatataAGTTTTGGGGTCCTTGTGTTAGGACAGTTAAGGTATGTGTTCTTGTAAAAATGGGATAAAAGCAATGTCTTGTGTTATGATTATTGTTTGTTGATGTtatgattataaatattattatttatatttaagggACTTCCTagtggattttgttttagattataATCCTCTTCTGTAGTTAATAcgttacaaaacaaacacaaaaacaaatgtcagggACTtttctagaaaacaaaaattacttaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195738 lncRNA downstream 3051 13028204 ~ 13033408 (-) True G155390
TU195740 lncRNA downstream 3051 13028204 ~ 13033408 (-) False G155390
TU195660 lncRNA downstream 65053 12896554 ~ 12971406 (-) False AMCG00005936
TU195672 lncRNA downstream 94814 12920123 ~ 12941645 (-) False AMCG00005939
TU195664 lncRNA downstream 125536 12908694 ~ 12910923 (-) False G155331
TU195743 lncRNA upstream 40933 13079485 ~ 13107493 (-) True G155391
TU195753 lncRNA upstream 69260 13107812 ~ 13108067 (-) True G155400
TU195763 lncRNA upstream 85005 13123557 ~ 13132539 (-) True AMCG00005946
TU195785 lncRNA upstream 213570 13252122 ~ 13252489 (-) True G155426
TU195788 lncRNA upstream 228411 13266963 ~ 13267162 (-) True G155429
AMCG00005967 mRNA downstream 10842 13022361 ~ 13025617 (-) True AMCG00005967
AMCG00005939 mRNA downstream 86492 12922400 ~ 12949967 (-) True AMCG00005939
AMCG00005936 mRNA downstream 129307 12896675 ~ 12907152 (-) True AMCG00005936
AMCG00005938 mRNA downstream 145984 12881785 ~ 12890475 (-) True AMCG00005938
AMCG00005937 mRNA downstream 155862 12872911 ~ 12880597 (-) True AMCG00005937
AMCG00005946 mRNA upstream 93175 13131727 ~ 13156318 (-) False AMCG00005946
AMCG00005948 mRNA upstream 130525 13169077 ~ 13171020 (-) True AMCG00005948
AMCG00005947 mRNA upstream 134334 13172886 ~ 13181536 (-) True AMCG00005947
AMCG00005943 mRNA upstream 201930 13240482 ~ 13244787 (-) True AMCG00005943
AMCG00005944 mRNA upstream 209202 13247754 ~ 13250688 (-) True AMCG00005944
TU195614 other downstream 181656 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 364001 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 1681826 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 1697345 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 1711392 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 1129538 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 1298339 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 1470681 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1641245 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1744079 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile