RNA id: TU195906


Basic Information

Item Value
RNA id TU195906
length 2781
lncRNA type sense_over
GC content 0.46
exon number 5
gene id AMCG00005971
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13664064 ~ 13698534 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGGTGATactttgtaacattttttttgttgttgatttcgCGTCGgagctgcgcagagctgcgggtCTGCCTCGGAGAGCAATACTGACTGTATGAGGCTTGGGCAGTCAGAGCAGTGCTGATCTCCTGCTACCAAATCAAGAGGAAAAAAGAGGCTTACAGCTCCAGGCGGTcagctaaaataaaatcaaagccTTGAAAGAAAGGACAAAAACTCTTCTCTACCTTTTGCCTTTGTCGTAGAGGAAATCCACATCCAATGCGTGTGGCCAGAGGAGTCCTGTGTGTAAAGTGCTTCTATTGTTTTATTCTGGCCATGATGCACTCCTGTAGCATTTAAAACGGGGACGAGGTGCTCCGGACGTGGGATCCTGCACAGCGCCTGGCCTGTCTACCCAACCCGACCCCAAAAAAcccaacaaaatattaaaaaagcgCTTTCCTCTCCATCCGGGAATATTTCTATACATAGGAGAAGAGCGTCTTTGCGTCGCTGCAGTTTCGTGGATCTTGTGCGATTTTAAGGAACCCTCCTGTCTTTTGgggcttttttttccttctatttgTTTGGGTCCTTTCCAcgaccaccaccaccacctaacctcccccccactccccttttttttttttttttctttctcctttttttttttttttttttttggccgaTCCCCCACTTTGGTCTCCCACCCTGACTCCAGGTCATCGGATGGACCAACAACCCCGGGCCCGGAGCTGCGCCAGCCGCGGAGCCCCCTCCTGCGAGGCCGTGCCCAGCGAGCCCTCCATGAACGTGCACATCCACTCCACCACCGGCACTCGCTTCGAGCTGTCCCTGCCGCTGGAGGAGACGGTGGAGGGGCTGAAGAGGAGGCTGTCGCAGAGACTCAAGGTCCCCAAAGAGAGACTGGCTCTGTTGCACAAAGAAACgCGGCTAAGTTCAGGAAAACTCCAGGATTTTGGCATCTCTGATGGGAGCAAGTTAACACTCGTCCCAACAGTGGAAGCAGGCTTAATGTCGCAAGCATCTCGACCCGAACAGTCCGTAATGCAGGCTTTGGAGAGTTTGACAGAAACCCAGGAGACCGTTTGAGGCAGACTGAGAACCGAGCCACACGCTGTAAGGTGGAGCGGCTGCAGCTCCTGATGCAGCAGAAGCGACTGCGCAGGAAGGCCCGACGCGACGCCCGCGCCCCCTACCAGTGGCTGCCCAACCGCAAGTCCAGccgcagcaacagcaacagcagcgtGTCCAGCGAGGGCTCCCTGGACCTGGACTTCGAGGACTCAGTCTGGAAGCCCGACGTCAAGGCCGATATGAAATCCGAATTTGTCATGGCGTGATGATtcggggagagagagggagagagagggaagagcgTGAAGAGCGTGAGATTTGAGAGCatgggagaaagagagagagaaagcaaggaCGGGATGAACGCCAGAGGAAGACCCGAGTTGAAGGGGAAGAGGAGTTGTgcgcattaaaaaaaactaaaacaaacgaAAAAACTTCTTTCCTCGCGGTCTTGTGACCAAATAACTTGTCACACGGTTCCCTatcaacttattttattttttcccctctctcatcagacatcttttaaaaatggCTCCGATTGGGTTATTTGGGAAACCGATCCAATAGTGACAAGTCAAGGGACACAAATAAAGATTATATACagtgaaattatatatacacatattagtatatatatatatggtgttgTTTTGGACTGGATGGGACTTTGCGATACGGCGACAAGGAGACTTTAAAAAGACTTCGAACATGTCTGccttacagaaaaacaatatggcggactttttttttttttttaaatttacgAGGAGAGTTGTGGATGGGAGATCCAAACTGAGCTGTTCACGTGACTGTGTGTGCTCCTGCCCTGTGTACTGTACAGAGAGGGCAGGACACCGTATGAAGAACTGCGCTTTGTTGCGCTTGGTAGACTTATCAACTGGGCATTCTAGGTATTTCATTCACCAATCAGAAACAAAAGAATTGCTAAGAAGGtgtctaaaaaaagaaaaacgtttttattttctaaaccaATATGTAGCATTGTTCACAAAGCATTCaggttttcaaaaacaaacaaaatagacgtgtttttttgcacatttttatgattttccaAACAGCTGGGGGAGTGGAAGGGAAGGTGGGGGAGGACAGTTGTCCAGACTTTTGAAAGGACATTCTCCATCAGGAGCCGAAGATggaggaaaatggaaaatgtattaagagGGACAATTAACACAGTGGAGCTCAAACTGCATCTGTTGACCGCAACCTCAGTGACACAGGTTATAAGTaggaatgaataaataaataaaatgaaagtgctTTAGAAGGGTGTAAaatcatgattttaaatgtatacgaaatcttttttttttttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCACTATGGCTTGGGTCAagccattaattaattaagaaatgcattcattcacacattcattcatgcattcatCAGAAACCTTCCACCCGTAGTTTGCATAACAATGCCATTGAGccagtacaaaaaaaagaaaagatagaGATCTAACTCAAACCAGTTACCCATGGTCACACCATGCCTCTTCTCTGTTCCTCGTTCTTGTACCAGAAGTCTGCTTTGTATCTTAGTGACTTGAAAACTTTCccagagagagattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtatgtatgtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195898 lncRNA downstream 85265 13568579 ~ 13578799 (-) False AMCG00005977
TU195883 lncRNA downstream 180045 13466970 ~ 13484019 (-) True G155503
TU195881 lncRNA downstream 198476 13464455 ~ 13465588 (-) True G155502
TU195790 lncRNA downstream 389371 13273640 ~ 13274693 (-) True G155431
TU195788 lncRNA downstream 396902 13266963 ~ 13267162 (-) True G155429
TU195941 lncRNA upstream 91904 13786006 ~ 13787634 (-) True G155550
TU196001 lncRNA upstream 182621 13876723 ~ 13881170 (-) True G155591
TU196003 lncRNA upstream 189489 13883591 ~ 13884628 (-) True G155593
TU196072 lncRNA upstream 395234 14089336 ~ 14092457 (-) True G155652
TU196075 lncRNA upstream 472077 14166179 ~ 14166404 (-) True G155655
AMCG00005977 mRNA downstream 80713 13568467 ~ 13583351 (-) True AMCG00005977
AMCG00005978 mRNA downstream 96583 13561072 ~ 13567481 (-) True AMCG00005978
AMCG00005976 mRNA downstream 130180 13530876 ~ 13533884 (-) True AMCG00005976
AMCG00005953 mRNA downstream 201504 13462216 ~ 13462560 (-) True AMCG00005953
AMCG00005952 mRNA downstream 267380 13393658 ~ 13396684 (-) True AMCG00005952
AMCG00005970 mRNA upstream 20882 13714984 ~ 13718428 (-) True AMCG00005970
AMCG00005969 mRNA upstream 57886 13751988 ~ 13761430 (-) True AMCG00005969
AMCG00005972 mRNA upstream 78380 13772482 ~ 13785885 (-) True AMCG00005972
AMCG00006003 mRNA upstream 99260 13793362 ~ 13800830 (-) True AMCG00006003
AMCG00006005 mRNA upstream 120090 13814192 ~ 13827586 (-) True AMCG00006005
TU195614 other downstream 809261 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 991606 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2309431 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2324950 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2338997 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 473988 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 642789 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 815131 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 985695 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1088529 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile