RNA id: AMCG00005972


Basic Information

Item Value
RNA id AMCG00005972
length 777
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00005972
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13772482 ~ 13785885 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGTGGATGAACATCTAGACTACCTGCCGGACCATGAGCTGATGAGCATGGACACCTTCATCCACCGCATTGATTCCACCGAGGTGATCTACCAGCCGCGCCGCAAGCGGGCCAAGCTCATCGGCAAGTACCTGATGGGAGACCTGCTGGGCGAGGGCTCCTATGGCAAGGTCAAGGAGATGCTGGATTCTGAGACGCTCTGCAGGAGGGCGGTGAAGATCCTCAAAAAGAAGAAGCTGAGGAGAATACCCAACGGGGAGGCCAACGTCAAGAAagaGATTCAGCTGCTACGAAGACTACGGCACAAAAATGTGATCCAGTTGGAGATGCTGGAGAGTGTTCCTGAAAAAAGGTTTCCAGTGTTTCAAGCTCACGGGTACTTTTGCCAGCTCATAGATGGTTTAGAATATTTGCACAGCCAGGGAATAGTTCATAAAGACATTAAACCAGGGAATCTGCTGCTGACGACAGACGGTGCACTAAAAATCTCCGACCTGggggtcgctgagGCTCTGCACCCCTTCGCGGAGGACGACACCTGTAGGACGAGTCAGGGGTCACCAGCGTTTCAGCCGCCAGAGATAGCCAATGGCTTGGACACTTTTTCAGGGTTCAAAGTGGACATCTGGTCTGCAGGCGTCACGCTATATAATATAACAACCAGCCTGTATCCGTTTGAAGGGGATAACATCTATAAGCTATTTGAAAACATTGGCAAGGGAGACTACAGTATTCCTGAAGACTGTGGCCCCCTCCTGACAGACCTCCTGAGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0097009 energy homeostasis biological_process
GO:0060575 intestinal epithelial cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K07298 STK11, LKB1; serine/threonine-protein kinase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195905 lncRNA downstream 73948 13665734 ~ 13698534 (-) True AMCG00005971
TU195906 lncRNA downstream 78380 13664064 ~ 13694102 (-) False AMCG00005971
TU195907 lncRNA downstream 95145 13675209 ~ 13677337 (-) True G155521
TU195898 lncRNA downstream 193683 13568579 ~ 13578799 (-) False AMCG00005977
TU195883 lncRNA downstream 288463 13466970 ~ 13484019 (-) True G155503
TU195941 lncRNA upstream 121 13786006 ~ 13787634 (-) True G155550
TU196001 lncRNA upstream 90838 13876723 ~ 13881170 (-) True G155591
TU196003 lncRNA upstream 97706 13883591 ~ 13884628 (-) True G155593
TU196072 lncRNA upstream 303451 14089336 ~ 14092457 (-) True G155652
TU196075 lncRNA upstream 380294 14166179 ~ 14166404 (-) True G155655
AMCG00005969 mRNA downstream 11052 13751988 ~ 13761430 (-) True AMCG00005969
AMCG00005970 mRNA downstream 54054 13714984 ~ 13718428 (-) True AMCG00005970
AMCG00005971 mRNA downstream 79090 13669280 ~ 13693392 (-) False AMCG00005971
AMCG00005977 mRNA downstream 189131 13568467 ~ 13583351 (-) True AMCG00005977
AMCG00005978 mRNA downstream 205001 13561072 ~ 13567481 (-) True AMCG00005978
AMCG00006003 mRNA upstream 7477 13793362 ~ 13800830 (-) True AMCG00006003
AMCG00006005 mRNA upstream 28307 13814192 ~ 13827586 (-) True AMCG00006005
AMCG00006004 mRNA upstream 45032 13830917 ~ 13841962 (-) True AMCG00006004
AMCG00005983 mRNA upstream 131450 13917335 ~ 13924862 (-) True AMCG00005983
AMCG00005982 mRNA upstream 141025 13926910 ~ 13932804 (-) True AMCG00005982
TU195614 other downstream 917679 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1100024 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2417849 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2433368 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2447415 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 382205 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 551006 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 723348 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 893912 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 996746 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031693 True 1320 mRNA 0.55 9 NC_007113.7 59046036 ~ 59057667 (+)
grasscarp (Ctenopharyngodon idella) CI01000079_00000058_00013248.mRNA True 1068 mRNA 0.53 8 CI01000079 58 ~ 13248 (-)