RNA id: AMCG00005976


Basic Information

Item Value
RNA id AMCG00005976
length 339
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00005976
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13530876 ~ 13533884 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTCTGGGAAGGCAGAGGACGGGGATAAGGCTAGTGCTGATTCGTGGAGGCTAATAGGCCCGGCCACCGAGCTTTCCAAGAAACAGTGCCGGTTGATGTACTCCTCTCTGGGCTGCGCTTCGGACCTGTGTCTCTTCCACATCAGAGGCGAGTTCTACGCTATGGAGGCCCGCTGCGCCCATTCGGGTGGCCCGCTGTGTGAGGGTGATATAGAGGAGGCGGATGGTGTTCTGCAGCAACAAGTGTATGAAGTGAAGGTGCAGGATGGGTCAGTGTATGTAAAGCACACAGCCCAGCTATCTTTAACACCATTTCCTTTGACCTCGAGGCAGTGA

Function

GO:

id name namespace
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195883 lncRNA downstream 46857 13466970 ~ 13484019 (-) True G155503
TU195881 lncRNA downstream 65288 13464455 ~ 13465588 (-) True G155502
TU195790 lncRNA downstream 256183 13273640 ~ 13274693 (-) True G155431
TU195788 lncRNA downstream 263714 13266963 ~ 13267162 (-) True G155429
TU195785 lncRNA downstream 278387 13252122 ~ 13252489 (-) True G155426
TU195898 lncRNA upstream 34695 13568579 ~ 13578799 (-) False AMCG00005977
TU195906 lncRNA upstream 130180 13664064 ~ 13694102 (-) False AMCG00005971
TU195905 lncRNA upstream 131850 13665734 ~ 13698534 (-) True AMCG00005971
TU195907 lncRNA upstream 141325 13675209 ~ 13677337 (-) True G155521
TU195941 lncRNA upstream 252122 13786006 ~ 13787634 (-) True G155550
AMCG00005953 mRNA downstream 68316 13462216 ~ 13462560 (-) True AMCG00005953
AMCG00005952 mRNA downstream 134192 13393658 ~ 13396684 (-) True AMCG00005952
AMCG00005924 mRNA downstream 143482 13385183 ~ 13387394 (-) True AMCG00005924
AMCG00005945 mRNA downstream 246148 13279303 ~ 13284728 (-) True AMCG00005945
AMCG00005944 mRNA downstream 280188 13247754 ~ 13250688 (-) True AMCG00005944
AMCG00005978 mRNA upstream 27188 13561072 ~ 13567481 (-) True AMCG00005978
AMCG00005977 mRNA upstream 34583 13568467 ~ 13583351 (-) True AMCG00005977
AMCG00005971 mRNA upstream 135396 13669280 ~ 13693392 (-) False AMCG00005971
AMCG00005970 mRNA upstream 181100 13714984 ~ 13718428 (-) True AMCG00005970
AMCG00005969 mRNA upstream 218104 13751988 ~ 13761430 (-) True AMCG00005969
TU195614 other downstream 676073 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 858418 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2176243 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2191762 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2205809 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 634206 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 803007 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 975349 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1145913 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1248747 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile