RNA id: AMCG00005977


Basic Information

Item Value
RNA id AMCG00005977
length 4748
RNA type mRNA
GC content 0.44
exon number 13
gene id AMCG00005977
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13568467 ~ 13583351 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCCGCCACGTTGTCTAACTGGCGAGAAGGAGGCGGGAGAAAATGGCGCAGACTTTGAGTCGGATGTAGGCGATGCGCAATCTCCAGCGGGCCTGACCCTCAACCAAGGGGCATCAGAAATCATGTCTGATGAAGGGAAACTGTTCGTTGGAGGCCTGAACTTTGATACTGATGAACAATCGCTGGAATCCATCTTTGCCAAGTATGGTGCCATCTCAGAGGTGGTTGTGATCAAAGACCGTGAGACCCAGAGTCAATTGATGGCAGGAACATCCGTGTGGATGAAGCTGGGAAGTCATCCGGGGGAAGATCCGGCGGCGGTGGATACAGGGGAGGACCCTCCGGTGGACGTGGTGGGTtcagaggaggcagaggaagagGTGGCGGAGGCTACGGTGGAGAGCGCAGCTATGGCGGTGGAGAGCGCAGCTATGGCGGTGGAGACCGAGGCTATGGCGGTGGGGACCGGGGGTATGGCGGAGGCCGCTTTGAGAACCGAAGTGGcggtggaggtggaggtggtggATACTCCTCTGGTGGTGGATATTACAACAGAGATAGCAGGGGTCAGGGAGGTTACAGTGACCGTTCCGGAGGCTCCTACAGGGATGGGTATGACAGCTATGAAAATAATCAACATGTCGGATGAAGGCAAGCTCTTTGTTGGCGGACTCAGTTTCGATACCAATGAACAGTCGCTGGAGGAGGTCTTCTCCAAATACGGCAACGTTTCAGAAGTGGTCGTTGTCAAAGACAGGGAAACGCAGAGGTCGAGAGGATTCGGCTTCATCACATTTGAAAACCCTGAAGACGCCAAGGATGCCATGATGGCCATGAACAGCAAGTCGATCGATGGCAGAGTGATCCGCGTGGACCAGGCCGGGAAGTCGTCCGGAGGCAGGTCCGGTGGAGGATACAGAGGAGGGTCCTCAGGGGGCCGGGGATTCTtcagaggaggcagaggaagagGTGGGCTGCACACGCTTCTGCTCAGAGCTGGATTGAACGGTTTCCTTTCAGGAGGTGGAGGCTACGGCAGCGGAGAGAGGAGCTATGGCGGAGGAGAGCGCAGCTACGGCGGCGGGGACAGGAGTTATGGCGGAGGCCGTTTTGACAACAGGAGTGGCAGCGGCGGATACTCCTCAGGATATTACAACAGGGATAGCAGGGGGCAGGGAGCTTATGGCGAGCGCTCCGGTGGCTCCTACAGGGATGGCTATGACAGCTATGGTATGTATGAACAGCAATGAGAGGGGTCTTGTAATCTGACAATTCTAGAGTACTTTAAGCAGTTTATCAAAATACTGGGGGATTGAAATAAGTAGATTTCTCAGCAATTTATACTAGCAGTGTACCGAATGGGCTAAATTGTCACACCTACACACCCACAGTCTGAATTAGACCCTGAGCGACAAGCGTCTTGTTGGAAAAGCATATCGATAACACTGGATTAAAGAGCTCAACTACAACCTGAATCTTCTGGAGCTAAACGATGAAAGAATCGTTACTCTTAAAATTTCCCTGAAGATACCGACACATACTGACCTTGTTCGAGGGGCATTTCGATTTAATCTCCACCGAGACAGTGTTGAAAAGTAAAAGTTCAGATCTCATGAGAAACCCACATCCAAATGGCGCAAGTGTAATCCACATAACGAAGAAACTATTcatgtgctgctgtttttaaaacgtTTGGGGGGTTGATAAGGGGAAcagtttatatacacatttataaagacagaaagaaaagcaaaataaatacttgtccATGTGCTTCAGTGCCTTTACATCTGTGCCTACTTCTTGTCCTCAGCTACACACGAGTAAAAAACCTTCCTGATTCAAGATCATCCCTTCAGTGGCTGTATTTATAAAGATACGCTCTTGGAAgaatcttttgtttttgttttttttgttctcgtGTCTTGTGTAATTTGGTTGTAGTCTCTGATTGTTGAACACAGCCTGACAGCTTCTGAAAATTAGCAAATCCCTCTTACCTTGTAGCTTGTGTTCTACATGTGCTTtgttaacataaaatgtatggACTGATTTCCCTCAAATTCAACACTTTTCAAAtgaggggattttttttatattccccCTCCCcgtcttttattttaaacatttgagcAAATTCTCAATAGAAGCTTGACAAGCTGTGATATGTTTAAATAAGGCTTTATGCGCCTTTCGTTCTGTAATGCATTCCTTTAGTGTAGCAAGGTAGGAATGCAACCTGGGGACACCCATTTCCAGCAAACCACCTTGATATGGCTAAAGAGGTGTAAATCTATTCAACACCCAAAGAGTGAATTACTTTGAGACTGCCGACGTTTTGGATAATGTTGAATTGGCCAGCCGCTAATTTGAAATTCCTCAAGCGCTAAATGCAGTCTGCTACACGTTGGACAGTATTTCGCTCTTTGCAGTATGTGGATTCTTAATGTTCTACAATGTAATGGACTGATCGTTCATCGACCTCTGCGAAATttttattttcccactcCAAAGGAATTGTTCTTTTCGTTCTCtgtatccaaaaaaaaaaaaaaaaaaaaaaccttaaaagaAACTTTTGTAAATTCTGGCTTCATGAAGCCCATTAAACAACTGGTTGAAATTGCTCTGCTTTCTTGTGCCTCCAAAGAACTAATCACATTTCTACTGTGGGAGAACCAGTTGAGGAAACTGACACTGAATGGCTAGTATACCCAGAGTGGAAGTGTTGGGGAATGGGGGAAGTGATTCTTAGTTTAGTTTGGAAAGTTGAGATCTGCTTAGATTTGCCTTGTTAATTCTGATTTTTAAGGggttttataattttgtatatatttttaattctcattAAAGTTTTTGTCCATAGACTAGTGAAGAAAAACTGCCCTGTAACTTTTGGTGCTGCATGTTAAACATAGCTGGTttagctttaaaatgtgttttccaatTTTGGTTCTCATGGTATTTAGTTTGTAGACTGTAGAGCTAGGAAAGTCTAGTAAAAGCCATCAATGTAACCTCAACTGGTACTGGGTGTGTTGTAATGCTTCATCACGTCCAAGAGCTCTCTGCTAGCGTTTGGAAAATCGGCAGAGTCCTTGGAGAACGAAGCGTTGTGCCTACCGACTCGTGAATCCTCTGAGATGAAAGCTGCTCTCTTGGCTAGTTCAAATGTGGAGATAGGCCTGTAATTCGAGGTAACTCCTTTTGCTCTCCTGTTCGCATCCTTCCAACTGAGTTCTCATTAAAAGAAAGTCATGAAATTTCCCTCAACAAAGATGTCAGAACAGATCCTTAATTTCCTAGCtgtaaactgtttttttgttttcttgatttcaACCTCCCCAATCCAATTAAGTGCTGCATGATTTCTGAGAGAATCCATGTTCCAATTTTTACCAAATGATCAACCAAGTAAAACTGCTCTGAAAATAGCGCCCAGGCTTGCTTGTTAGATTTGCTCATGGGGCTTAAACCTTGGGAATGGAAAGCCTCCGAGCTGGGAATACCTGGCTCCAATTGTCCTTATTCTCCAGACTTGTAAAGGATTGTCTTCCGAGCATTTCGGTCCACTCTCCTGTAACATGGCTACTTCCCTTAGAGAAAATCTCCACATCTATCTGTTTGTCTTCAAAGTTCTCCCTCTGGCATTCATTTCATCCAAAAGGCTGTTTCTTGAATGGTGTGATGTACCCTACCAATTTAAGACCTCAAAGCCTAcatgtatgaaaatatacaaGTTCTAGATTCCCCTTAATGTCAATTGCaatcaaatgtttgtttttttgctagCCCAAATGTTAAGATACCTTTTAGTTTATTAATGTGCCTGCATATATACTTTTTAGGTTTTGATAGTGTTTATTGTAAGCTTTATTATAATGCCATAGTTTCAAATCTGTTAACACCATCCTAAAaggtgtatatgtatgtatgtatatattctgaatttgatttatttttggggggtgtATAATATTGCCCAAGTTAGACCTAGCTTTTTAAAGTCtagttttaaaatctaaattcatCTGGGGCTGTGTGTGTAAGGAAGTTGAATGCCAGTAACTATTAACCTAGTCTTACTATAACTGCTGCATGCATGTAGACTTGGGTGTATGTCCTGTGTTTGCTGGCTGTAATACAACATGAGATAAATGTAAGCagtaaaagtgttttcttttaatcagTGGCATATATATTCACTGTGATAACttaatctttcttttaaataggTTGAGGATTTTCAACCATGGATTGGTTTGAAGTGACCTGCGGGAGCAAGTCTTGCCGAGGAGCGTCTTTAAAGGCAAACGCACATGAGTGATACCCACCAGGGTGGTGATGGGCAGACGAAAGATGTACCAAAAAAGGAGTCATTAGCACAGGCAACCAGATCATGTGGGAGACATTCATGCGATCAGTCGTCAAGGGGCGTCAATTAACACCCCCTTTGAGCTGGACGTAGCCCTATGAACTGTCCGATTAGTAAAAGTGCATCCTCCTGTGTGACTAGATGCTGAAGTGCGTTCCTGACTATGATCCCTGAAACATGGGAGCTGTTCTCTGTATGCTACAATGACTGTAAAGCGCCTCTGTGGCACGGTATCtgaaataaagattatttttcaattgacaTTCTTTCcgctttgatttaaaaaataaaatcaaacctgTCACTGAAAGCTGTACTTTCTCGATCGGCCGCCCTGAGAAGagagactgcagccctgccatGAGAGAG

Function

GO: NA

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195883 lncRNA downstream 84448 13466970 ~ 13484019 (-) True G155503
TU195881 lncRNA downstream 102879 13464455 ~ 13465588 (-) True G155502
TU195790 lncRNA downstream 293774 13273640 ~ 13274693 (-) True G155431
TU195788 lncRNA downstream 301305 13266963 ~ 13267162 (-) True G155429
TU195785 lncRNA downstream 315978 13252122 ~ 13252489 (-) True G155426
TU195906 lncRNA upstream 80713 13664064 ~ 13694102 (-) False AMCG00005971
TU195905 lncRNA upstream 82383 13665734 ~ 13698534 (-) True AMCG00005971
TU195907 lncRNA upstream 91858 13675209 ~ 13677337 (-) True G155521
TU195941 lncRNA upstream 202655 13786006 ~ 13787634 (-) True G155550
TU196001 lncRNA upstream 293372 13876723 ~ 13881170 (-) True G155591
AMCG00005978 mRNA downstream 986 13561072 ~ 13567481 (-) True AMCG00005978
AMCG00005976 mRNA downstream 34583 13530876 ~ 13533884 (-) True AMCG00005976
AMCG00005953 mRNA downstream 105907 13462216 ~ 13462560 (-) True AMCG00005953
AMCG00005952 mRNA downstream 171783 13393658 ~ 13396684 (-) True AMCG00005952
AMCG00005924 mRNA downstream 181073 13385183 ~ 13387394 (-) True AMCG00005924
AMCG00005971 mRNA upstream 85929 13669280 ~ 13693392 (-) False AMCG00005971
AMCG00005970 mRNA upstream 131633 13714984 ~ 13718428 (-) True AMCG00005970
AMCG00005969 mRNA upstream 168637 13751988 ~ 13761430 (-) True AMCG00005969
AMCG00005972 mRNA upstream 189131 13772482 ~ 13785885 (-) True AMCG00005972
AMCG00006003 mRNA upstream 210011 13793362 ~ 13800830 (-) True AMCG00006003
TU195614 other downstream 713664 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 896009 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2213834 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2229353 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2243400 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 584739 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 753540 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 925882 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1096446 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1199280 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU480417 True 2139 lncRNA 0.44 4 NC_048569.1 62086822 ~ 62090999 (+)