RNA id: TU195898


Basic Information

Item Value
RNA id TU195898
length 3190
lncRNA type sense_over
GC content 0.39
exon number 3
gene id AMCG00005977
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13568467 ~ 13583351 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNGGACTTTGGTTGATTTTCCGAACTTGAGCAGAATTCTTGAACGTAATGAGGCATTACAATGGAACCATTGCCAGCTGATCACAGACAAAAGCAACTTCTGACTAACACTTTGTCGACCCTGCATTATGATCATAAAACCATACTCTGCTCTAACAGTTTAGACTGCACAGCAGTGGAAGTTAGATAAAGTAGTGCAATAAGTCAAAGATGCCCATTTCTACCTAAATGTTCCATTAGACAACCCAATTTATCCTAAGACACCCCACAAACTCAActaatgttcccaaattaaaTCTACCATCCCTTAAAATACATCCCCACTCCCCTGAAACTAGACAATGATGTTCAAAAACCTTCTTTTCAGCTGGGTTTGTACAGGTGTGGTGGGTTCCTTGGAGGCACAAGAAATCAGAGCTTTTTCCAACTTTTCGTTTAATGGGCTTCATGAAGCCAgaatttacaaaataagtgtcttcagtgtttttttttttttttgtacagagaACAGAAAGCACATTTCTTTCCAGCATTGGTTAGGTAACAGTTTGAAGTCTGATCATAATCGAGTCCATAACAGCAGAGAAGATTCAGAAAGCAAATGTTGCAAAGAGCAAAATACCTCCGACAGACTGTATTAAGCAATTGGGTCGGGCCATGACAAAGTGGCCAATTCACGGTTGTCCAAGTTATGCAGTCTGAAAGCAAGTAGCTCTTTAGCGCTTGAATATTTACAGATCTTTAGCCATATCAAGGTGGTTTGCCAGGAATGGGTGCATTCCTACCTTGCTACACTAAAGGAATGCGTTACACAACTTAAGGCACAAAAAGCCTTAACACATTTCACAgcttctaaattaaaacaaactgctttttttCCAAATCTATAGATCAACTGGTTTAAGTTTTGCAAGAAGAGCTTAAACTCCccatacaattttttttctttttttaaaaaaagagcaGCCAGGAGCAAAACATGAACGATTACATTTGCTTATTTCTAGAAGCGATCAGGCTGCGTTGAACAGGAACAGTGTTGAAGATTAAAAGTCGGACGATCACATGAGCAGTGagtttcactttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccttaaaagaAACTTTTGTAAATTCTGGCTTCATGAAGCCCATTAAACAACTGGTTGAAATTGCTCTGCTTTCTTGTGCCTCCAAAGAACTAATCACATTTCTACTGTGGGAGAACCAGTTGAGGAAACTGACACTGAATGGCTAGTATACCCAGAGTGGAAGTGTTGGGGAATGGGGGAAGTGATTCTTAGTTTAGTTTGGAAAGTTGAGATCTGCTTAGATTTGCCTTGTTAATTCTGATTTTTAAGGggttttataattttgtatatatttttaattctcattAAAGTTTTTGTCCATAGACTAGTGAAGAAAAACTGCCCTGTAACTTTTGGTGCTGCATGTTAAACATAGCTGGTttagctttaaaatgtgttttccaatTTTGGTTCTCATGGTATTTAGTTTGTAGACTGTAGAGCTAGGAAAGTCTAGTAAAAGCCATCAATGTAACCTCAACTGGTACTGGGTGTGTTGTAATGCTTCATCACGTCCAAGAGCTCTCTGCTAGCGTTTGGAAAATCGGCAGAGTCCTTGGAGAACGAAGCGTTGTGCCTACCGACTCGTGAATCCTCTGAGATGAAAGCTGCTCTCTTGGCTAGTTCAAATGTGGAGATAGGCCTGTAATTCGAGGTAACTCCTTTTGCTCTCCTGTTCGCATCCTTCCAACTGAGTTCTCATTAAAAGAAAGTCATGAAATTTCCCTCAACAAAGATGTCAGAACAGATCCTTAATTTCCTAGCtgtaaactgtttttttgttttcttgatttcaACCTCCCCAATCCAATTAAGTGCTGCATGATTTCTGAGAGAATCCATGTTCCAATTTTTACCAAATGATCAACCAAGTAAAACTGCTCTGAAAATAGCGCCCAGGCTTGCTTGTTAGATTTGCTCATGGGGCTTAAACCTTGGGAATGGAAAGCCTCCGAGCTGGGAATACCTGGCTCCAATTGTCCTTATTCTCCAGACTTGTAAAGGATTGTCTTCCGAGCATTTCGGTCCACTCTCCTGTAACATGGCTACTTCCCTTAGAGAAAATCTCCACATCTATCTGTTTGTCTTCAAAGTTCTCCCTCTGGCATTCATTTCATCCAAAAGGCTGTTTCTTGAATGGTGTGATGTACCCTACCAATTTAAGACCTCAAAGCCTAcatgtatgaaaatatacaaGTTCTAGATTCCCCTTAATGTCAATTGCaatcaaatgtttgtttttttgctagCCCAAATGTTAAGATACCTTTTAGTTTATTAATGTGCCTGCATATATACTTTTTAGGTTTTGATAGTGTTTATTGTAAGCTTTATTATAATGCCATAGTTTCAAATCTGTTAACACCATCCTAAAaggtgtatatgtatgtatgtatatattctgaatttgatttatttttggggggtgtATAATATTGCCCAAGTTAGACCTAGCTTTTTAAAGTCtagttttaaaatctaaattcatCTGGGGCTGTGTGTGTAAGGAAGTTGAATGCCAGTAACTATTAACCTAGTCTTACTATAACTGCTGCATGCATGTAGACTTGGGTGTATGTCCTGTGTTTGCTGGCTGTAATACAACATGAGATAAATGTAAGCagtaaaagtgttttcttttaatcagTGGCATATATATTCACTGTGATAACttaatctttcttttaaataggTTGAGGATTTTCAACCATGGATTGGTTTGAAGTGACCTGCGGGAGCAAGTCTTGCCGAGGAGCGTCTTTAAAGGCAAACGCACATGAGTGATACCCACCAGGGTGGTGATGGGCAGACGAAAGATGTACCAAAAAAGGAGTCATTAGCACAGGCAACCAGATCATGTGGGAGACATTCATGCGATCAGTCGTCAAGGGGCGTCAATTAACACCCCCTTTGAGCTGGACGTAGCCCTATGAACTGTCCGATTAGTAAAAGTGCATCCTCCTGTGTGACTAGATGCTGAAGTGCGTTCCTGACTATGATCCCTGAAACATGGGAGCTGTTCTCTGTATGCTACAATGACTGTAAAGCGCCTCTGTGGCACGGTATCtgaaataaagattatttttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195883 lncRNA downstream 84560 13466970 ~ 13484019 (-) True G155503
TU195881 lncRNA downstream 102991 13464455 ~ 13465588 (-) True G155502
TU195790 lncRNA downstream 293886 13273640 ~ 13274693 (-) True G155431
TU195788 lncRNA downstream 301417 13266963 ~ 13267162 (-) True G155429
TU195785 lncRNA downstream 316090 13252122 ~ 13252489 (-) True G155426
TU195906 lncRNA upstream 85265 13664064 ~ 13694102 (-) False AMCG00005971
TU195905 lncRNA upstream 86935 13665734 ~ 13698534 (-) True AMCG00005971
TU195907 lncRNA upstream 96410 13675209 ~ 13677337 (-) True G155521
TU195941 lncRNA upstream 207207 13786006 ~ 13787634 (-) True G155550
TU196001 lncRNA upstream 297924 13876723 ~ 13881170 (-) True G155591
AMCG00005978 mRNA downstream 1098 13561072 ~ 13567481 (-) True AMCG00005978
AMCG00005976 mRNA downstream 34695 13530876 ~ 13533884 (-) True AMCG00005976
AMCG00005953 mRNA downstream 106019 13462216 ~ 13462560 (-) True AMCG00005953
AMCG00005952 mRNA downstream 171895 13393658 ~ 13396684 (-) True AMCG00005952
AMCG00005924 mRNA downstream 181185 13385183 ~ 13387394 (-) True AMCG00005924
AMCG00005971 mRNA upstream 90481 13669280 ~ 13693392 (-) False AMCG00005971
AMCG00005970 mRNA upstream 136185 13714984 ~ 13718428 (-) True AMCG00005970
AMCG00005969 mRNA upstream 173189 13751988 ~ 13761430 (-) True AMCG00005969
AMCG00005972 mRNA upstream 193683 13772482 ~ 13785885 (-) True AMCG00005972
AMCG00006003 mRNA upstream 214563 13793362 ~ 13800830 (-) True AMCG00006003
TU195614 other downstream 713776 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 896121 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2213946 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2229465 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2243512 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 589291 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 758092 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 930434 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1100998 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1203832 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile