RNA id: AMCG00005978


Basic Information

Item Value
RNA id AMCG00005978
length 1206
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00005978
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13561072 ~ 13567481 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTCTGCCGCCGGTCTTGCGTGTGCTGTTGCAGTCTCGTCCAAACTGAAAGTGATCCATCACGATGTCTGACGAAGGAAAGCTTTTCGTGGGAGGCCTGAGCTTCGACACCAACGAACAAGCCCTGGAAGATGTGTTCGCCAAGTATGGCCAGATCTCTGAAGTTGTCGTGATCAAGGACCGTGAGACCCAGAGATCTCGAGGCTTCGGATTCGTCACCTTCGAGAACCCTGACGATGCGAAAGACGCCATGATGGCCATGAATGGCAAGTCCGTCGATGGCAGACAGATCCGCGTTGACCAGGCTGGGAAGTCTTCTGGGAACAGGCCCGGGGGGGCCCATCAGGGGGCCGTGGAGGAGGATTCTACCGTGGGGGCAGAGGGGGTGGTGGAAGAGGAGGTGGAGAACGGGGATATGGCGGCGGCCGCTATGAGAACAGAAGTGGTGGCTATTCTTCTGACAGAGGATACTACAACAGAGACCGGCCACAGGGAGGCGGCTCGTACAGAGACAACTACGACAGCTATGGTGATGATGCCGGCTGGTAAAGCGAGCGGCAGCAACAGCACTCCTGCAAGTCTGGGCAGAGACCCCTTTCACCCCAGCCCACCCCTCCACGCCCCCGCAGCCAAGATCCCCGTCCCAAATCCACGGCTTGCGGACGCACaatacttaatatttttttctgttgaaaCCGACCATGTAGATATGAACAGTCCTGGAGAAGCACGGAGGGGTTGGGGAAGCGGGGTGCTGGCTTCTTTTCCACGTGGTGAAAGCCATCCGTTCCAGTCTGTCCTAGCCCCTCCatgagagggagaaaaaattGAATTTCCAAGTTCTCTAAGGTTCCATTGTAAGACATTGCCCCCCTGGTGCTGTGCAGACCGCTCAGAAGTGCATCCTGATGAGATTTTCGGCAGCTGTCTGCACAGAAACCCTTTTAAGATGCCCCTCTGAAGTGGGGTAAGGGAATTGGTAAGTTTTAGTGaaactccccccacccccaaaaagtCTGCCACCCCTGTTTCCATTTTCAAATTGGAGGTAAGCTACTGTCCTATACTCAACTCTTCTTGGAGGGAGAGTATTATCCCAACTGCCTGGAGTTTAAATCATTCTTGGGACCACATAAGAACTGGGTTGcatctcattttcattttatccgCTCGctttcctgatttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K13195 CIRBP; cold-inducible RNA-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195883 lncRNA downstream 77053 13466970 ~ 13484019 (-) True G155503
TU195881 lncRNA downstream 95484 13464455 ~ 13465588 (-) True G155502
TU195790 lncRNA downstream 286379 13273640 ~ 13274693 (-) True G155431
TU195788 lncRNA downstream 293910 13266963 ~ 13267162 (-) True G155429
TU195785 lncRNA downstream 308583 13252122 ~ 13252489 (-) True G155426
TU195898 lncRNA upstream 1098 13568579 ~ 13578799 (-) False AMCG00005977
TU195906 lncRNA upstream 96583 13664064 ~ 13694102 (-) False AMCG00005971
TU195905 lncRNA upstream 98253 13665734 ~ 13698534 (-) True AMCG00005971
TU195907 lncRNA upstream 107728 13675209 ~ 13677337 (-) True G155521
TU195941 lncRNA upstream 218525 13786006 ~ 13787634 (-) True G155550
AMCG00005976 mRNA downstream 27188 13530876 ~ 13533884 (-) True AMCG00005976
AMCG00005953 mRNA downstream 98512 13462216 ~ 13462560 (-) True AMCG00005953
AMCG00005952 mRNA downstream 164388 13393658 ~ 13396684 (-) True AMCG00005952
AMCG00005924 mRNA downstream 173678 13385183 ~ 13387394 (-) True AMCG00005924
AMCG00005945 mRNA downstream 276344 13279303 ~ 13284728 (-) True AMCG00005945
AMCG00005977 mRNA upstream 986 13568467 ~ 13583351 (-) True AMCG00005977
AMCG00005971 mRNA upstream 101799 13669280 ~ 13693392 (-) False AMCG00005971
AMCG00005970 mRNA upstream 147503 13714984 ~ 13718428 (-) True AMCG00005970
AMCG00005969 mRNA upstream 184507 13751988 ~ 13761430 (-) True AMCG00005969
AMCG00005972 mRNA upstream 205001 13772482 ~ 13785885 (-) True AMCG00005972
TU195614 other downstream 706269 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 888614 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2206439 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2221958 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2236005 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 600609 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 769410 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 941752 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1112316 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1215150 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile