RNA id: AMCG00005983


Basic Information

Item Value
RNA id AMCG00005983
length 2936
RNA type mRNA
GC content 0.57
exon number 17
gene id AMCG00005983
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13917335 ~ 13924862 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTTGCATGTATCTGCACAGTGCACCGAGAGAGAAAACAACGCAAATGTCATAGTAGCTCCGACACTTGACATCCGGCACGCAAGTGAAGGCAGCCCTGGCCAGAAGATGGGCGACTGGAACCTGCCCCTGGGGACTCTAGGAGAAGGAGTCCTGAGCCGGCTGTCCGACATGCTGGACAATTCCACATGTGGCTGGAGACAGCTGGCCACCGCCGTCACTGACCAGCCCCATCTCCGGTGCAGTGAGAAGGAGCTGATGAACTGCTCCCTGCAGGTCCTCAGTGCCAAGGGTAGCCCTAGCCGCAGCCTCCTGGCCAAACTGGCCGACCGCTCTTGCTCCCTGGGCGTTCTGCTGCAGTGCCTGAAGAAGATGGACCACAGGGAGGCGGTGCGCTACCTCACTGACACAGTGGCGGGTTCAGCGGGGCACATCAGCATCCTGGTGCAGCCGCGATCCCAGAATGCCCCGGAGGGCGGGCGGCTGATGTTGACCTGCCGGGCCAGCAGTTCCCCTGAGCTGGTCTTCAGCCCCCTCAGTGCAGCTCACAACGGCTACTACATCTGCCGCATCAGCCAGGGGGATCAATTCCTCTTCTCCCAATGGGCCAAGGTCAGCGTGGCCCAGACCCTCCTCCAGGCCAGCTTCCTGCCCTCCACCGTGAGTGGCCTGCGCATCACCACCCAGCCCTGGCCAATGGAAGTGGCCGAGCGTGACCTTCTTCTCCTGGAGTGCGTAGCTGAGggcaacccccccccacagtaCCAGTGGTACCACAACAAGGAGCCCGTGTCTCAGGCCCACCAGTCCTGTCTGAAGATCAACTGCGTGACAACAGCGGACAGAGGGACATACAGATGCAGGGTGTATAACCTCTACCACGAGCTGTGGAGCGACCCAGTGCATGTGGAGATCGGTCCTGGCTCCGTCTCCGATGAAGAGAGAGATCCAGGTTTTGTGCCCAGCCCGGCTCGTCAGCTAAGTCGTTTCTACGCCACAGACAAGGTGGCCCTCCTGATGGGCAACATGAACTACCAGCATCACCGGCAGCTCAGAGCGCCCATGGCGGACGTCCACGAGCTCACCAACCTGCTGCGCCAGCTGGACTTCAAGGTCGTATCCCTGCTGGACCTGGACAGACACGAGATGCAGAGCGCAGTCACGGagttcctgctgctgctggacagAGGGGTGTACGGGCTGCTGTACTTCGCTGGTCACGGCTACGAGAACTACGGCAACAGCTTCATGGTGCCCATCGACGCCCCCGCTTCTTACACCTCGGAGCACTGCCTGTGGGTGCAGGACGTGCTGCAGCGCATGCAGGAACGCAAGACGGGCCTCAATGTTTTCCTGCTGGACATGTGTCGCAAACGGAATTTCAACGATGACATCATTCCCCAGCCCGGGCCGCTGAAGGTGACGGCGAACATTGTGTTCGGATACGCCACGTGTGTCGATGCCGAGGCCTACGAAGTGAATAAAGGCTCCCTGTCGAATGGGATCTTCATCAGCTTCCTGAGACAGCGCCTCCTGGAGGACGAGAAAGTCACAGTCATGCTGGACAGAGTGGCTGAAGACATGGGCCAGTGCGAGATCACGCGGGGCAGGCAGGCTCTGGAGCTGCGCAGTAACCTGTCGGAGAGGCGAGCACTCACCGACCGCATCCAGGGCTCTGACTGTCCTGAGGCCACCTCCGCACGCAACCTGCAGTGGGCCATCGCACACGTGCTCCCGGAGAGAAAGTACCTGCAGTTTGACTGTGGCGTGAGGGTGCAGCTGGGCTTCGCTGCTGAGTTCTCCAACATCATGATCATCTACACCCGCGTCCTGGAGAAGCCTGCCAACGTCCTGACCTGCAGCGCCCAGCTCACCGACTTCTCAGAGGGGCTGGAGGTGGACCTGAAGATGACAAACCAGGAGAGCCCCCAAGACGCTGGCAGCCTGCTGTTCACATTGGACAACCTGCCTTTCCCAGAGCCCGTGTGTCTGTACACCCGCCTCAGCGCCCTGCAGAGACTCAAGAAGGACCTCACCTTCACCGTGTGCCTCCACTACCAGTACTCCAACATGGACGAGGAGGTCCAGGAGCGACAAACGGTCACCGTAGGCAAACCACTGGTGGCCAAACTCAACCTCCACGAGCCCCGGCAGCCgtacccctcctcctcctccatctcctcctccacctcctccttcGACCTGCGCTCCCTCAGCCTCGCAGAGTCCTCCTCCTTCTCCGAGTGCCTGGAGAGCGGAAGCCTGGCCAGCTTCCCGGCGTCCGAGACGTCTTCCGTGGGCTCGGCCTCCACCTGCTGGTCCTACTACTCGCACCCAGGGGACTTCCCCGACACTACCGCCCCCAGGAAAGTCAACCTGCCGGAGGAGACTCTCAGCCCCGAGTTCCTGGATGAGGACCGGCCCAAGTCGCTCTCAGAGAAACCCCTCAGCCTGCCCCATGAACACTTAGACGACCTCACCTTCAGCTTCCATAGCAAACAAAACTTCCACTCCTGCTAGTGTGTTTAACCACGGGTACTGCATATGCACTCAATCTGCCATGTATGAGTGCCACCCACCTTtgtatagtgtttttttgttttgttttattcaattatgGCTGCTGAAAGTGAAACGCCATTCTGTTTAGTTAAATtcataatgaatgaatgagtttAAATAACAGAATTAATAAGTGCCTTAACACGAACTGGCGATGCCTTTCGTAAGTCATTTACAGACTCttaactgaaaagaaaactgaaacaccAGTGTTAACAGCGATATTGACCAAATTGTAAGCTAGGGATTATTTATAACTGGGCTGAGTAACATTTTatgccattttgtttgtttattaaaagcTTTTAGGGTTTTGAGGGGGAATTCCAATTAGatattgtaattttattcattaaaaaaaatcaaaagcc

Function

GO: NA

KEGG:

id description
K07369 MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196003 lncRNA downstream 32707 13883591 ~ 13884628 (-) True G155593
TU196001 lncRNA downstream 36165 13876723 ~ 13881170 (-) True G155591
TU195941 lncRNA downstream 129701 13786006 ~ 13787634 (-) True G155550
TU195905 lncRNA downstream 218801 13665734 ~ 13698534 (-) True AMCG00005971
TU195906 lncRNA downstream 223233 13664064 ~ 13694102 (-) False AMCG00005971
TU196072 lncRNA upstream 164474 14089336 ~ 14092457 (-) True G155652
TU196075 lncRNA upstream 241317 14166179 ~ 14166404 (-) True G155655
TU196134 lncRNA upstream 375613 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA upstream 375613 14300475 ~ 14305697 (-) False G155701
TU196137 lncRNA upstream 394117 14318979 ~ 14323114 (-) True G155703
AMCG00006004 mRNA downstream 75373 13830917 ~ 13841962 (-) True AMCG00006004
AMCG00006005 mRNA downstream 89749 13814192 ~ 13827586 (-) True AMCG00006005
AMCG00006003 mRNA downstream 116505 13793362 ~ 13800830 (-) True AMCG00006003
AMCG00005972 mRNA downstream 131450 13772482 ~ 13785885 (-) True AMCG00005972
AMCG00005969 mRNA downstream 155905 13751988 ~ 13761430 (-) True AMCG00005969
AMCG00005982 mRNA upstream 2048 13926910 ~ 13932804 (-) True AMCG00005982
AMCG00005999 mRNA upstream 168038 14092900 ~ 14136611 (-) True AMCG00005999
AMCG00005997 mRNA upstream 234269 14159131 ~ 14171565 (-) True AMCG00005997
AMCG00005998 mRNA upstream 248983 14173845 ~ 14179120 (-) True AMCG00005998
AMCG00005996 mRNA upstream 262386 14187248 ~ 14198914 (-) True AMCG00005996
TU195614 other downstream 1062532 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1244877 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2562702 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2578221 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2592268 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 243228 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 412029 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 584371 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 754935 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 857769 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile