RNA id: TU195534


Basic Information

Item Value
RNA id TU195534
length 1400
RNA type TUCP
GC content 0.50
exon number 3
gene id AMCG00005984
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12711778 ~ 12714571 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGAAGTTGCGCACAGTGCACGTCCGGTGTTTTCAAGGGCACAGGGCGTCTGCGCGGCCGGGGCTTCACGTGTGTGACTTTCAGGCTTTTGACCGGCTTCGGTTCTCCACATTGAGAGATTTTAGTGCATCATGGACAGTTTTGGGTCTGATTTCTCCTCCGGGGCCGCTGGGTCCGGGAAGATGGACACCGGCATGATCATGGAGCAGGTGAAAGTGCAGATCGCCGTGGCCAACGcgcaggagctgctgcagAGGATGACTGACAAGTGCTTTAAGAAATGCATTGGCAAACCAGGGGGCACACTGGACAACTCTGAACAGAAATGCATTGCGATGTGTATGGACCGCTATATGGACACGTGGAACACTGTCTCCAAGGCCTACAACTCCAgactgcagagggagagagcgcGCATCTAACTGCCGGTGCCCACCCCCTGTCTCAGAGGTGCTCCGGCCCGTGGCGATGAAAGGCAGAGCTGGGCTGTGAGCAGGGCCTGCCAAGCAGTTTCACCCACAGACTCAAATCCATCAGCCTGGACTGAATTGCCTCAGGATTTTCAACTGTGAAAGCAAACAATTTTTTAGCCTTTCAGTCATTACCAGGATATTGTTTTCCTTCGTTTTGTCCCTATATGTGGGCGGGGGTggacaaaatggaaaagaaggGAAGAAAACCAATGTTTTCTCCTGACCCCTACATAATATTTGTCCCTTTGTTATGGATCGTTTTCCATCGACTAAGCTTGTTGCAAATCATGTCCGTGTCCTGTAGCACTTCTCTGAACAAAATGCCACCTACCCTGTCCCTCTCCCCAAGCCCAAGGCTGTGTCTTGATTACAGTGCTTCCCTGTGAAAAAACGTCTTTATCTTTGCAGTCGTGTAGAACGATCTCGATACTCGGGGACTCGTTCAAAGAGCTCACTGTTTTCAGTACTTTGACCTTAAATACACACAAGGATCTCCCTTTTTCTTCCTAGAAACGCATCCAACCCAGACATCTAGACACAGAGAACAAAATAGaattggagagaaaaataaaccctCATCATCGTTAACCCACACGCACCACCTCGACGGGAGCAAACCGTCTTTAATTTCCGTCATTTTAGCCGAGAGCATTGTTACTGCCACAGTGGCAGCTTTGTTTCGGCTGTGCTCTTCCTGGCAGAGACGCCAGGATCCATCCCAGATGTGTTTCCTTTGTGCACTTAAAGTTCATCggtgtgttggtgtgtgctCGTCCTCGGCTCACACAACACTAGCCAGAGAGGGACGTTATCATAGGGAGTGTGTGGGTTAAGATGCAGCCGGTGTGAGTAAAGAGAATGATAGCAGGATGATTATTGGTTGGGTAGACGATCTGGTGAAGTACACAATAAAGGAGATTGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195507 lncRNA upstream 80407 12611183 ~ 12631371 (+) True G155206
TU195509 lncRNA upstream 126370 12545222 ~ 12585408 (+) True G155207
TU195499 lncRNA upstream 157011 12553425 ~ 12554767 (+) False G155206
TU195472 lncRNA upstream 264094 12447480 ~ 12447684 (+) True G155182
TU195305 lncRNA upstream 508306 12201736 ~ 12203472 (+) True G155053
TU195624 lncRNA downstream 177073 12891086 ~ 12891396 (+) True G155304
TU195625 lncRNA downstream 180107 12894120 ~ 12895452 (+) True AMCG00005935
TU195630 lncRNA downstream 194681 12908694 ~ 12910931 (+) True G155310
TU195616 lncRNA downstream 206087 12920100 ~ 12937119 (+) True G155297
TU195633 lncRNA downstream 217303 12931316 ~ 12931875 (+) True G155313
AMCG00005987 mRNA upstream 2235 12693874 ~ 12709543 (+) True AMCG00005987
AMCG00005922 mRNA upstream 105930 12561697 ~ 12605848 (+) True AMCG00005922
AMCG00005920 mRNA upstream 166921 12521871 ~ 12544857 (+) True AMCG00005920
AMCG00005921 mRNA upstream 218205 12491641 ~ 12493573 (+) True AMCG00005921
AMCG00005915 mRNA upstream 267891 12438288 ~ 12443887 (+) True AMCG00005915
AMCG00005985 mRNA downstream 22114 12736127 ~ 12738524 (+) True AMCG00005985
AMCG00005986 mRNA downstream 25458 12739471 ~ 12741891 (+) True AMCG00005986
AMCG00006062 mRNA downstream 71288 12785301 ~ 12839664 (+) True AMCG00006062
AMCG00005935 mRNA downstream 180254 12894267 ~ 12894633 (+) False AMCG00005935
AMCG00005965 mRNA downstream 255861 12969874 ~ 12995480 (+) True AMCG00005965
TU195532 other upstream 4341 12706491 ~ 12707437 (+) False AMCG00005987
TU195530 other upstream 13248 12697348 ~ 12698530 (+) False AMCG00005987
TU195527 other upstream 15459 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other upstream 15459 12692760 ~ 12696319 (+) False AMCG00005987
TU195202 other upstream 805934 11903386 ~ 11905844 (+) False AMCG00005895
TU195694 other downstream 311751 13025764 ~ 13033408 (+) False AMCG00005964
TU196052 other downstream 1383791 14097804 ~ 14098696 (+) True G155637
TU196053 other downstream 1394160 14108173 ~ 14109870 (+) True G155638
TU196155 other downstream 1661982 14375995 ~ 14383580 (+) True AMCG00006009
TU196402 other downstream 2389443 15103456 ~ 15105567 (+) True AMCG00006092

Expression Profile