RNA id: TU195527


Basic Information

Item Value
RNA id TU195527
length 400
RNA type TUCP
GC content 0.53
exon number 3
gene id AMCG00005987
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12691816 ~ 12709543 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcctcttgaacctcttccttgcagctgcttgtaatgaaaaccttttgattggaggtgcctctctctctggatttcagTGTCACCCTAcgtgatgaaccgaagatttcaaattttgagtCACTGgaccataagaccttcttccagtcttcagtagtccactggcggtgcttcatggccAAGGTTCACACAATGCAGGCGGCTCTGACATTGCTGTTGGTGTGCGGTGTGGCCGTGTCCTCATCCCAGCCAGGGGATCCGTCTCTGGACAGCACCTGGGCAGACTGGAAGACTCTGCATGGCAAGCAGTACACTGAGGAGGACTCTGAGGGCTACAGGAGGCAGATTTGGGAGGAGAACCTGCGTTTCATCGAGCAGCACAACCTGGAGCACTCCCAGGNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195507 lncRNA upstream 60445 12611183 ~ 12631371 (+) True G155206
TU195509 lncRNA upstream 106408 12545222 ~ 12585408 (+) True G155207
TU195499 lncRNA upstream 137049 12553425 ~ 12554767 (+) False G155206
TU195472 lncRNA upstream 244132 12447480 ~ 12447684 (+) True G155182
TU195263 lncRNA upstream 483862 11970824 ~ 12207954 (+) True G155017
TU195624 lncRNA downstream 194767 12891086 ~ 12891396 (+) True G155304
TU195625 lncRNA downstream 197801 12894120 ~ 12895452 (+) True AMCG00005935
TU195630 lncRNA downstream 212375 12908694 ~ 12910931 (+) True G155310
TU195616 lncRNA downstream 223781 12920100 ~ 12937119 (+) True G155297
TU195633 lncRNA downstream 234997 12931316 ~ 12931875 (+) True G155313
AMCG00005922 mRNA upstream 85968 12561697 ~ 12605848 (+) True AMCG00005922
AMCG00005920 mRNA upstream 146959 12521871 ~ 12544857 (+) True AMCG00005920
AMCG00005921 mRNA upstream 198243 12491641 ~ 12493573 (+) True AMCG00005921
AMCG00005915 mRNA upstream 247929 12438288 ~ 12443887 (+) True AMCG00005915
AMCG00005956 mRNA upstream 422053 12256605 ~ 12269763 (+) True AMCG00005956
AMCG00005984 mRNA downstream 15543 12711862 ~ 12714571 (+) True AMCG00005984
AMCG00005985 mRNA downstream 39808 12736127 ~ 12738524 (+) True AMCG00005985
AMCG00005986 mRNA downstream 43152 12739471 ~ 12741891 (+) True AMCG00005986
AMCG00006062 mRNA downstream 88982 12785301 ~ 12839664 (+) True AMCG00006062
AMCG00005935 mRNA downstream 197948 12894267 ~ 12894633 (+) False AMCG00005935
TU195202 other upstream 785972 11903386 ~ 11905844 (+) False AMCG00005895
TU195111 other upstream 1086541 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 1366742 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 1605805 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 1681462 11007544 ~ 11010354 (+) True AMCG00005840
TU195530 other downstream 1029 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 10172 12706491 ~ 12707437 (+) False AMCG00005987
TU195534 other downstream 15459 12711778 ~ 12714013 (+) False AMCG00005984
TU195694 other downstream 329445 13025764 ~ 13033408 (+) False AMCG00005964
TU196052 other downstream 1401485 14097804 ~ 14098696 (+) True G155637

Expression Profile