RNA id: TU195530


Basic Information

Item Value
RNA id TU195530
length 526
RNA type TUCP
GC content 0.52
exon number 2
gene id AMCG00005987
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12691816 ~ 12709543 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCTAACtacagctcagctctcattTCTCAGTTCTCTTAGACAGAGTTTCTGGTTGATCTTGTGGGAACGTTATTCACTCATGTCAAACTCTTGGTCATCAGACTCAGCAGGAGGTCACCGAGATGATGACAGGGTTCAGCCCTGATGATGCCCTGGAGGACACCCCTGTCTCCAACTGGATTGGCTCCTCCCAGCGCCCTCCGAGGGAGCTAGACTGGAGAAACAAGGGATACGTAACCGGAGTGAAAAGCCAGGGTTCCTGCGGCTCCTGCTGGGCCTTTTCTGCTACGGGGGCCTTGGAGGGACAATACTTCAAGAAGACAGGCAAGCTGGTGTCTCTGAGTGAGCAGAACCTGGTGGACTGCACCAAGAACAATAAGTATGGAAACCATGGATGCAAAGGGGGGAACAGCTTCCGAGCTTTCAAATACATCAGGGACAACAAGGGGATTGCCTCAGAGAAGAGCTACCCTTACACTGGAAAAGTAAGCTCTTCTCCGAGACTGCCAATTGCGAAAACCtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195507 lncRNA upstream 65977 12611183 ~ 12631371 (+) True G155206
TU195509 lncRNA upstream 111940 12545222 ~ 12585408 (+) True G155207
TU195499 lncRNA upstream 142581 12553425 ~ 12554767 (+) False G155206
TU195472 lncRNA upstream 249664 12447480 ~ 12447684 (+) True G155182
TU195305 lncRNA upstream 493876 12201736 ~ 12203472 (+) True G155053
TU195624 lncRNA downstream 192556 12891086 ~ 12891396 (+) True G155304
TU195625 lncRNA downstream 195590 12894120 ~ 12895452 (+) True AMCG00005935
TU195630 lncRNA downstream 210164 12908694 ~ 12910931 (+) True G155310
TU195616 lncRNA downstream 221570 12920100 ~ 12937119 (+) True G155297
TU195633 lncRNA downstream 232786 12931316 ~ 12931875 (+) True G155313
AMCG00005922 mRNA upstream 91500 12561697 ~ 12605848 (+) True AMCG00005922
AMCG00005920 mRNA upstream 152491 12521871 ~ 12544857 (+) True AMCG00005920
AMCG00005921 mRNA upstream 203775 12491641 ~ 12493573 (+) True AMCG00005921
AMCG00005915 mRNA upstream 253461 12438288 ~ 12443887 (+) True AMCG00005915
AMCG00005956 mRNA upstream 427585 12256605 ~ 12269763 (+) True AMCG00005956
AMCG00005984 mRNA downstream 13332 12711862 ~ 12714571 (+) True AMCG00005984
AMCG00005985 mRNA downstream 37597 12736127 ~ 12738524 (+) True AMCG00005985
AMCG00005986 mRNA downstream 40941 12739471 ~ 12741891 (+) True AMCG00005986
AMCG00006062 mRNA downstream 86771 12785301 ~ 12839664 (+) True AMCG00006062
AMCG00005935 mRNA downstream 195737 12894267 ~ 12894633 (+) False AMCG00005935
TU195527 other upstream 1029 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other upstream 1029 12692760 ~ 12696319 (+) False AMCG00005987
TU195202 other upstream 791504 11903386 ~ 11905844 (+) False AMCG00005895
TU195111 other upstream 1092073 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 1372274 11319964 ~ 11325074 (+) True G154798
TU195532 other downstream 7961 12706491 ~ 12707437 (+) False AMCG00005987
TU195534 other downstream 13248 12711778 ~ 12714013 (+) False AMCG00005984
TU195694 other downstream 327234 13025764 ~ 13033408 (+) False AMCG00005964
TU196052 other downstream 1399274 14097804 ~ 14098696 (+) True G155637
TU196053 other downstream 1409643 14108173 ~ 14109870 (+) True G155638

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000039_03190180_03192097.mRNA True 924 mRNA 0.50 6 CI01000039 3190180 ~ 3192097 (-)