RNA id: TU195574



Basic Information


Item Value
RNA id TU195574
length 315
RNA type TUCP
GC content 0.56
exon number 3
gene id AMCG00005989
representative False

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12669256 ~ 12675994 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AATGGAAACTATTGACCATCTTAGACCAGCAGCTATAAAGCGCGCAGGTTTCCATCTCTGAGAGGTGTCTGTGTGTCGACTTCACTGAGTTTGCTGTGTTCACAGACACAGGTGCCTGATCTCTGGCCCAGGTTCACACAATGCAGGCGGCTCTGACATTGCTGTTGGTGTGCGGTGTGGCCGTGTCCTCATCCCAGCCAGGGGATCCGTCTCTGGACAGCGCCTGGGCAGACTGGAAGACTCTGCATGGCAAGCAGTACACTGAGGAGGACTCTGAGGGCTACAGGAGGCAGGTTTGGGAGGAGAACCTGCGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU195546 lncRNA downstream 60207 12605723 ~ 12611445 (-) True G155235
TU195473 lncRNA downstream 223933 12447520 ~ 12447719 (-) True G155183
TU195331 lncRNA downstream 545524 12125161 ~ 12126128 (-) True G155073
TU195312 lncRNA downstream 647980 12003140 ~ 12023672 (-) True G155058
TU195313 lncRNA downstream 654286 12007468 ~ 12017366 (-) True G155059
TU195581 lncRNA upstream 23241 12695699 ~ 12696319 (-) False AMCG00005992
TU195584 lncRNA upstream 29679 12702137 ~ 12702641 (-) False AMCG00005992
TU195586 lncRNA upstream 34000 12706458 ~ 12706966 (-) False AMCG00005992
TU195602 lncRNA upstream 73965 12746423 ~ 12746716 (-) True G155284
TU195652 lncRNA upstream 218649 12891107 ~ 12891358 (-) True G155326
AMCG00005988 mRNA downstream 6546 12662352 ~ 12665106 (-) True AMCG00005988
AMCG00005923 mRNA downstream 29461 12628716 ~ 12642191 (-) True AMCG00005923
AMCG00005916 mRNA downstream 261459 12365732 ~ 12410193 (-) True AMCG00005916
AMCG00005917 mRNA downstream 308776 12349245 ~ 12362876 (-) True AMCG00005917
AMCG00005918 mRNA downstream 331154 12335317 ~ 12340498 (-) True AMCG00005918
AMCG00005992 mRNA upstream 5947 12678405 ~ 12711136 (-) True AMCG00005992
AMCG00005991 mRNA upstream 45120 12717578 ~ 12722749 (-) True AMCG00005991
AMCG00005990 mRNA upstream 54389 12726847 ~ 12735907 (-) True AMCG00005990
AMCG00006064 mRNA upstream 74471 12746929 ~ 12759443 (-) True AMCG00006064
AMCG00006063 mRNA upstream 171307 12843765 ~ 12850145 (-) True AMCG00006063
TU195020 other downstream 1317019 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 1332538 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 1346585 11320737 ~ 11325067 (-) False AMCG00005876
TU194822 other downstream 1758907 10843841 ~ 10912745 (-) False G154677
TU195614 other upstream 171320 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 1495632 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 1664433 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 1836775 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 2007339 14679797 ~ 14682961 (-) True AMCG00006037

Expression Profile