RNA id: AMCG00005992


Basic Information

Item Value
RNA id AMCG00005992
length 678
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00005992
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12678405 ~ 12711136 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCAAATATCTAGCTCCCTCGGAGGGCACTGGGAGGAGCCAGTCCAGTTGGAGACAGGGGTGTCCTCCAGGGCATCGTCAGGGCTGAACCCCGTCATCATCTCGGCGCTGTCCAGAGACGGATCCCCTGGCTGGGCTGAGGACACGGCCACACCGCACACCAACAGCAATGACAATAAGAAATGCCAGTACAGAAGGGCACAGAAAGCTGCCACTTGCAAGGGCTATACATTCCTGCCTAGAAATAACGAAACAACCCTGAGAGATGCCCTAGCTGTCATCGGGCCCATCGCTGTGTCTGTTGATGCCAGCCAAAAGACCTTTCACCTGTACCGTTCTGGTATTTACTACGACCCCAAATGCTCCCACAACACTTCCCATGCAGTCTTAGCAGTGGGATACGGGATCTCCTTTTTCCAGTCAGGAAACCGCCATCCCAATAAGTACTGGATCTTGAAGAACAGCTCCCTCGGAGGGCGCTGGGAGGAGCCAATCCAGTTGGAGACAGGGGTGTCCTCCAGGGCATCATCAGGGCTGAACCCTGTCATCATCTCGGTGCTGTCCAGAGACGGATCCCCTGGCTGGGATGAGGACACGGCCACACCGCACACCAACAGCAATGTCAGAGCCGCCTGCATTAAAGGTTTCCTGGTGTTAAATGAATACAGCCTTTAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195546 lncRNA downstream 66960 12605723 ~ 12611445 (-) True G155235
TU195473 lncRNA downstream 230686 12447520 ~ 12447719 (-) True G155183
TU195331 lncRNA downstream 552277 12125161 ~ 12126128 (-) True G155073
TU195312 lncRNA downstream 654733 12003140 ~ 12023672 (-) True G155058
TU195602 lncRNA upstream 35287 12746423 ~ 12746716 (-) True G155284
TU195652 lncRNA upstream 179971 12891107 ~ 12891358 (-) True G155326
TU195660 lncRNA upstream 185418 12896554 ~ 12971406 (-) False AMCG00005936
TU195664 lncRNA upstream 197558 12908694 ~ 12910923 (-) False G155331
TU195665 lncRNA upstream 197558 12908694 ~ 12910923 (-) True G155331
AMCG00005989 mRNA downstream 2411 12669256 ~ 12675994 (-) True AMCG00005989
AMCG00005988 mRNA downstream 13299 12662352 ~ 12665106 (-) True AMCG00005988
AMCG00005923 mRNA downstream 36214 12628716 ~ 12642191 (-) True AMCG00005923
AMCG00005916 mRNA downstream 268212 12365732 ~ 12410193 (-) True AMCG00005916
AMCG00005917 mRNA downstream 315529 12349245 ~ 12362876 (-) True AMCG00005917
AMCG00005991 mRNA upstream 6442 12717578 ~ 12722749 (-) True AMCG00005991
AMCG00005990 mRNA upstream 15711 12726847 ~ 12735907 (-) True AMCG00005990
AMCG00006064 mRNA upstream 35793 12746929 ~ 12759443 (-) True AMCG00006064
AMCG00006063 mRNA upstream 132629 12843765 ~ 12850145 (-) True AMCG00006063
AMCG00005937 mRNA upstream 161775 12872911 ~ 12880597 (-) True AMCG00005937
TU195574 other downstream 5947 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 1323772 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 1339291 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 1353338 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 1765660 10910516 ~ 10912745 (-) True G154677
TU195614 other upstream 132642 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 1456954 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 1625755 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 1798097 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1968661 14679797 ~ 14682961 (-) True AMCG00006037

Expression Profile