RNA id: AMCG00005997


Basic Information

Item Value
RNA id AMCG00005997
length 5985
RNA type mRNA
GC content 0.43
exon number 10
gene id AMCG00005997
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14159131 ~ 14171607 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTGTCTCGACCAGCAAGTAGATGGCGTCTGACTGCGGTTCCCAGTCCACCAGTTAGAAAGCTGAGTCACAGAACTGGCGAGTTGGTAACGGTGGCCGTGAAGGAGCTGGGTATTTCGGGAGAACTTGTATCGATAATTGCCATTGCCCGGGAAGATGTTGACGATCACGCTGAAAACGCTCCAGCAGCAGACCTTTAAGATCGAGATCGACCCGGAGCTGACGGTAAAAGCGTTGAAGGAGAAGATAGAGGCAGAGAAAGGATGCGATGGTTATCCGGCCTCTGGACAGAAGCTCATCTATGCAGGTAAAATCTTAAATGATGACATACCTTTAAAAGACTACAAGATAGACGAGAAGAACTTCGTGGTAGTCATGGTTACAAAGCCAAAACCAACCTCCCCTCCACAGCCCTCCAGTCAACCCGCCCCACCCCCTGCTGTTGTGAGTGTGCCGCCgccggctgctgctgctgctgctgcccccccTGTCGCtacccctgcccctgccccagctccagccccagccccagccacCGCCCCCACACCTGCCCCTGCCCCCACACCTGCACCTGCCCCCGCCCCTTCAGAAGAATGCCCGCCTCCCAAGCCAGTTCCCCCGCCTGCAGCCCCCGTCaccagcacagacacagcagaGGCAGTGTCCGCCCCCCCCGACACCCAGACCGAAGAGAAACCGCGAGAGGAGCCCAAGGAGGAGCCTGCTGCTGCCCCCGCCACCCCCACTTCCTCCAGCATTGCGGAAGATCTGAGCCTTTTAGAAGAAGCAGCGTCTATATTAGTTACAGGACAAGCGTATGAGAATCTGGTGACCGAGATCATGTCTATGGGCTATGAGAGAGAGCAGGTCATCGCGGCACTACGGGCCAGTTACAATAACCCAGACAGAGCAGTGGAGTACCTTCTCACAGGCATTCCTGCCGAACCTGACCTCCCCCCTGGAGAAGTAGTGCGGCCCCCTCCCGCCACgaaccccaccccccagcctGCAGAGAGAGCCCAGCCTGGCCCTGCAGCCAGTGGCACTGCAGTGTCGTCCTCTGGTAACCCTCTGGAGTTCCTCAGGAACCAGCCGCAGTTCCAGCAGATGCGTCAGATCATCCAGCAGAACCCGGCGCTCCTTCCCGCACTCCTCCAGCAGCTGGGCCGGGACAACCCACAGCTGCTCCAGCAAATAACCCAGCACCAGGAGCGGTTTGTTCAGATGCTAAATGAGCCACTAGGAGAGGTAGGAGGGGAGGGTGCTGAGGGTCAAGGGGCACCGCAGACAAACTACATCCAGGTCACACCACAGGAGAAAGAGGCCATCGAGAGGTTGAAAGCCCTGGGTTTTCCAGAAGGACTAGTTATTCAAGCCTACTTTGCCtgtgagaaaaatgaaaacctggCCGCCAACTTCCTCCTGCAGCAGAACTTCGATGATGAGTAAAGACGCTCAGcagggagagagcgagggagagtgggaggggGAGCGTGCGTGAGGCCCTATGGGGACTGGGAATATCGCAGGGTCCcaggaatgcttttttttttttgtttcttttttttttgttccccgGACAAAGCCATGATGTGAAGTTCTTGAGCGAACGGCGCCAGCTCACTGTTTGAGTAATCTTGAATCACCGCGCTTCTGCATCGACGCTGCCATTCCTGCTGCTCCTGCTTTCACTCTAGGTTTACGGTGTGgcgattttttttccttcattttattcGATCTATTTCGCATTTGCTTTCTCGATCGacttattagtttttttttttaattgattaatttagttttcttgcccccccccccattccaGCTGTTACCTGTtctgagagaaagagggggggaagaaaacGCAAACATGACAATCAGATTCCGTACGAACATCACAGCTCCCGTGTGGCCGTAGTTTTTTCATGCCACCGATTATCCAATTGAAGCTACTGCTGTGTTAGTCCAGGCTCACTTAGTTGGCCGTTACCCTACAAAGAATGCCATGTATATGCAAAACCTCTTATCTGTATCATTGAGGCAAAAATAGTCAAACTCATTGAAGCCGTACATGCTTTTTTATCAGCATATCTACCCTAGACAGGAgcgatttcttattttttttaaaagctctgCGTAACCCTACAGATACCTCCTCTTCCCCTTTTGCTAAAGCAATGGAAAAGGCAACAGCGCTTTCTGGAGTATTCCTGCTGATCCTATTGCCAATAAATGATGAAGTGAAGTATATGATATATTAGGCTTGATCTCttctaatgaaaatgtattgcagcTGTGCGAAAAGGGATCcgttgtgtgcatgtgtgtccaTCTGACCAGGTGCGTAGCTGCAGGCCTACAGTATGAACTTTTGTGTGTCATCCGGCTAGTACTTAAACTGTtaatctccccccccccacaagaATATGAAGAGTTTTCTGATATCTGCGGGTTTCGGCTGGAGATTCTCTTTCCAGAAACGGAAAAGAAACCAAGCTCTCGATTTATTAACTGACTTGAGCCTTAAGCTGTATTGAAGTATGCATTTACCTTCTAGAAAAAAGCTTTTAGAAAAACTGTGCTTTTTCTATTCATGGATAGTATTGTCTAGGCTAATGTACACTActtttactgtaatttatttacaaCGGCACAACGTTTGTATGTGTTTGATGTGGATCCGTATTCTCCCCTCCAATGCAAATAGGTACACTACTTTTTTAAGTGATAGTGGGTATTAAATGGCCTCCTCGTAATGAATCACCCAGCTGCTCGTACAGTATGAAGTATCTAGTGTTTGTGCATTTGACTTacagaaatgttacatttatctgaaatgttttttttttttattactattatttaatttttgtttctgataaaaaaaaaaaaatgaatccacTAGGTAAAACCTTAATTGTATATCAATTTTACTGGCAGCTGTTATAAgggaaattgattaaaaaaaagtgaagtcACGCTGTGGTTAAAATAAGCACAGATAGCATAAACTAAATATACAGACAACTGCTTTAGGGGAACTGCATAGATAATGTTTCACTTTTTAGACAACTACGATGCTGTGATTTTTGTTTAGGCttgatgtttaatttcattCTTTTGACTAGGTAATGGACTTCTCTCGTTCACTTTCTGAAGTCTGTTGTCATTTCTGTCTAGCcctttagagagagagagtaggatTTGTCTGCATTATAACTCCTGTATAGATGCAGTCAAACCCTCGAGCATATAGGTCTCTCTACCTGTGGGAAtcttaactttattttaattgtgtcacCAGTCCGATCTCTTTGAAAATGGTCTATATCTTGGGTTTGACTGTATTTTGCTGTCTGAAGGTTACTTCTGTGCTACAAGTACATGCATGCTCTTTTAAACTGATTATTCATCTgtgctttatacattttcaggtCAAATTGAATGAATTTCACTTCCACAGTATTTAATAAGcaattgcaaagaaaaaaaaaatctgctgtaTCGAAACAGGATTGCTGATGGGCAGAAAGACCAgagatttgtgtatttttaaactgtgaaaGCAAGCCCCTTATAAACAGTGCTACTTTAACCTGTCTGCGTTGAAGCTGTTAATTGGGCTGAAACCCCTTGATTTATTGTAACTTGTCCATTGAATGTAACCAAAGAAAGTGCAACAGTGTAGAACATACCTGTCGTATACAATAGGAATCACATTTAATTCACATGAgctatgttttaatgtatgtaaaaggACTTTTCCATTTGTCTCCGTTTAGATTTTCAGTTGCCAtgagatttttttcttctcataaccagtttttatgtatgtttatttattggacTTAGGCATCTATCCCTGGATTTTCAGTGCTGGAAGAGTGAAAAATCATAGTTGTGGCCGATAGGAAACCCGTTGGtgggtgtttttctttcctattgAAAAGTGATTCGGTGAATTTGAGCATTTTGCCCCGTAGGCAGCGGACATCTCAATCAGCTGATGCAGCACATTGAGCTATCCCTGTCCTAAAATacacatctttaaaataatcgTTCTAGAGTTGAGAGATTGTTCATCTTTCACTTTTGCTTTCTTTCGTTTATGTGCATTTGCCTCCaaagaaatgtttgaaattaggtgtttttttttgttttttttttcacctcctTAAAAGCTTAATGCATCTTTCCGTGTGCAGTTCAAGTGacctgcagaaaaaacaacacttgcACACCTTCACAGCAGATTTATGTGTACGTTGAAGACCTTTTAAGATATGCAGGCCTCACAAggtttgctttcaaaaacacagcCTTGTTGATGCGTTCTGTTCATTCACACGTTTACGAAGCATCTTCCAGGTCAAGTATTATCTTTCCTCCCCCTCTGGTCTAATTGAAGTGTTGCTTTCATGTTTCATCAACATTCACCCTTTTAAGAAAGTGTCACTGATGTTTCCTAGGCAGTTTATGAAATATTCCAGTTGCAACAGATTTGCTTTTCTCTCATCATCAGCCACATGCATCACTGATCTTTGTTGCTTGCAATTAGGAGAACTGTAATTAGAATCCCCAGTAAACGTTTCCAAGGTTACAGATTGAACAGCATTGTTTGAGCGCTGCTGTATTtctcttctttattttgtttcttgcttGTCCTGTCCTGCCTGTCCTGTGAGATTCTGTTGTTTCTCCTCAGATGATTTCCCATAAGtaactattaaaatgtgtgatttgtttcCTTCTCTCCTTTAAGAGCACGTATACATGATCACACTGAAGTGTCTTTCGACCTTGTCATCTAGTTACCACAAATCCTGTGGATTTTAAGTTaccttattttattgttttcatgtgtgtgtgtgcgtgtgtgtgtgtgtataggacAAGGCTACAATCTGATGCATACACATGTAAAAGACCAAAGGGAAGAATTTGAGTTTTACACCAACCAAAGGGATCAGCTGTCTGCAATGGAAATGTCAACATTGAAGCGACGCTTAAGTTTCCCCCTAAATATTTCCTGTCCTTCAGTTCTGAAAGAGAACCCTTGCAATGGAAATTCTAAGCAGAAACAATTTTCCAGAAACGTGCATAACTTGTATACATGTAATTGGACACACAAgtcatttgaatacatttaaagtcgACACGAAATGCACCTCTGTATTAGTGTAAACTTTTAAACATTGATTCTTTTTGTTTACTCCCTAGGTTACAGTAAAATAAGCTACAGTTCTTTTTTGAATGAGAACAATAAGGGAGATATATGTATGGTTCACTAATTATGCACTTAACAGTGCCATTAGATGTTAACAGCATAAATGTATTCGGCCTAATGATCTTGGCAGAGATACAAAAGCTTGTGAGATTGTCAGCAAAAGGAGAAAAAGTGACTACCACGCCATCGCATTATTAAGGGTGGCATTCTTACCCATAATGAATGACTCCGTCCCCCCCAGAGCTGCTGTAATATAGTGTGTTAATGATATTGAATTTTGCTGTTACAAAGATGGGACTTTAATTGTGAGAGTGCTGTCCTGGGAGTTGCATGTTTTCAGTTTGCTAGTGTTCTGTCTGTCCGAGCTGCAGCGTGCTGTGCAAACCATTCACATACTGCAGTGGGggtggtttatttgttttggattttttaatttaattttattaggtttctttattttaaggTTTGAATTTTAtgatttgtccttttttttctgcctttctGGAAAAACACATCAAGTTCAGTTTTAGCCTTAACAGCATCACTTCTTCAAGGCTCGGTTTGCTGAATGGTTCTGGGATTCATCGATTTcagcattatgtaaaataaatagcttttacAAAGCTTTGAAAAAGATTCTGGTGTCTTTTCTTCCTCCTGGGCTCTTGGGGTGTTGGAGAGCTCTTGTCCAGTTGAACTATGAGGATTTACTATTCAGACTAAACTTTTAACAGGGGTTCTGAACCGAGTTTGTC

Function

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0003684 damaged DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196072 lncRNA downstream 66674 14089336 ~ 14092457 (-) True G155652
TU196003 lncRNA downstream 274503 13883591 ~ 13884628 (-) True G155593
TU196001 lncRNA downstream 277961 13876723 ~ 13881170 (-) True G155591
TU195941 lncRNA downstream 371497 13786006 ~ 13787634 (-) True G155550
TU195907 lncRNA downstream 481794 13675209 ~ 13677337 (-) True G155521
TU196134 lncRNA upstream 128910 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA upstream 128910 14300475 ~ 14305697 (-) False G155701
TU196137 lncRNA upstream 147414 14318979 ~ 14323114 (-) True G155703
TU196154 lncRNA upstream 198196 14369761 ~ 14370182 (-) True G155717
TU196199 lncRNA upstream 250939 14422504 ~ 14424746 (-) True G155754
AMCG00005999 mRNA downstream 22520 14092900 ~ 14136611 (-) True AMCG00005999
AMCG00005982 mRNA downstream 226327 13926910 ~ 13932804 (-) True AMCG00005982
AMCG00005983 mRNA downstream 234269 13917335 ~ 13924862 (-) True AMCG00005983
AMCG00006004 mRNA downstream 317169 13830917 ~ 13841962 (-) True AMCG00006004
AMCG00006005 mRNA downstream 331545 13814192 ~ 13827586 (-) True AMCG00006005
AMCG00005998 mRNA upstream 2280 14173845 ~ 14179120 (-) True AMCG00005998
AMCG00005996 mRNA upstream 15683 14187248 ~ 14198914 (-) True AMCG00005996
AMCG00006012 mRNA upstream 78226 14249791 ~ 14256738 (-) True AMCG00006012
AMCG00006014 mRNA upstream 92823 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006013 mRNA upstream 165376 14336941 ~ 14341603 (-) False AMCG00006013
TU195614 other downstream 1304328 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1486673 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2804498 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2820017 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2834064 11320737 ~ 11325067 (-) False AMCG00005876
TU196147 other upstream 165326 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 337668 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 508232 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 611066 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 1261867 15433432 ~ 15436866 (-) True G156088

Expression Profile