RNA id: TU196074


Basic Information

Item Value
RNA id TU196074
length 530
RNA type TUCP
GC content 0.52
exon number 4
gene id AMCG00005997
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14159131 ~ 14171607 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAACTAGGCTACTATTTATTTCAGTGAACGGTCTGTGTTCATGTCTTGTCTCGACCAGCAAGTAGATGGCGTCTGACTGCGGTTCCCAGTCCACCAGTTAGAAAGCTGAGTCACAGAACTGGCGAGTTGGTAACGGTGGCCGTGAAGGAGCTGGGTATTTCGGGAGAACTTGTATCGATAATTGCCATTGCCCGGGAAGATGTTGACGATCACGCTGAAAACGCTCCAGCAGCAGACCTTTAAGATCGAGATCGACCCGGAGCTGACGGTAAAAGCGTTGAAGGAGAAGATAGAGGCAGAGAAAGGATGCGATGGTTATCCGGCCTCTGGACAGAAGCTCATCTATGCAGGTAAAATCTTAAATGATGACATACCTTTAAAAGACTACAAGATAGACGAGAAGAACTTCGTGGTAGTCATGGTTACAAAGCCAAAACCAACCTCCCCTCCACAGCCCTCCAGTCAACCCGCCCCACCCCCTGCTGTTGTGAGTGTGCCGCCgccggctgctgctgctgctgctgcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196075 lncRNA downstream 1686 14166179 ~ 14166404 (-) True G155655
TU196072 lncRNA downstream 75633 14089336 ~ 14092457 (-) True G155652
TU196003 lncRNA downstream 283462 13883591 ~ 13884628 (-) True G155593
TU196001 lncRNA downstream 286920 13876723 ~ 13881170 (-) True G155591
TU195941 lncRNA downstream 380456 13786006 ~ 13787634 (-) True G155550
TU196134 lncRNA upstream 128868 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA upstream 128868 14300475 ~ 14305697 (-) False G155701
TU196137 lncRNA upstream 147372 14318979 ~ 14323114 (-) True G155703
TU196154 lncRNA upstream 198154 14369761 ~ 14370182 (-) True G155717
TU196199 lncRNA upstream 250897 14422504 ~ 14424746 (-) True G155754
AMCG00005999 mRNA downstream 31479 14092900 ~ 14136611 (-) True AMCG00005999
AMCG00005982 mRNA downstream 235286 13926910 ~ 13932804 (-) True AMCG00005982
AMCG00005983 mRNA downstream 243228 13917335 ~ 13924862 (-) True AMCG00005983
AMCG00006004 mRNA downstream 326128 13830917 ~ 13841962 (-) True AMCG00006004
AMCG00006005 mRNA downstream 340504 13814192 ~ 13827586 (-) True AMCG00006005
AMCG00005998 mRNA upstream 2238 14173845 ~ 14179120 (-) True AMCG00005998
AMCG00005996 mRNA upstream 15641 14187248 ~ 14198914 (-) True AMCG00005996
AMCG00006012 mRNA upstream 78184 14249791 ~ 14256738 (-) True AMCG00006012
AMCG00006014 mRNA upstream 92781 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006013 mRNA upstream 165334 14336941 ~ 14341603 (-) False AMCG00006013
TU195614 other downstream 1313287 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1495632 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2813457 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2828976 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2843023 11320737 ~ 11325067 (-) False AMCG00005876
TU196147 other upstream 165284 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 337626 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 508190 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 611024 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 1261825 15433432 ~ 15436866 (-) True G156088

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037048 True 1599 mRNA 0.52 10 NC_007132.7 382451 ~ 410123 (+)