RNA id: AMCG00005998


Basic Information

Item Value
RNA id AMCG00005998
length 1747
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00005998
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14173845 ~ 14179120 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTAGGTCGCAatttaaacaggaaacacttctcTGTCTTCTCACTTTTTACCGTTACAGGTTTCAGGACTGCCTGCGGTTTCAAACATGGCCGCCCTCTGTCTCAGCGTGGTGTAATCCGAGCACTTCCGAGGAAGAACTCGTGGTCTCCGCTCATTGGCCAGGGCCCGGGCCAATCAGAGACGGCCATCTGTTCGGAATAGCAGTGAGAAATTCCCAGATTACGCGCAGTATAAACCGGGGCAGATCCGAGGGGCTGGCACACACGGAGCTGACCTGGGCATCGAGAGGGGCAAACATGCGCTCAACCGCGGTACTGTTCTCGCTGTGTGTGGCGGCACTCACCGTCAATGCCACGGTTTATTTCAAAGAGCAGTTCCTCGATGGAGATGCTTGGAAGAGCCGCTGGACTGAATCGAAGCACAAAACCGACTATGGCGAGTGGAAGCTGACCGCCGGGAAATTCTATGGAGACGCAGAGAAGGATAAAGGTGACCAGGATGCCCGCTTCTACGCGCTCTCCTCCCGGTTTGATGCCTTCAGCAACGAGGGGAAACCGTTGGTGATCCAGTTCACCGTGAAGCACGAGCAGAAGATCGACTGCGGCGGCGGCTACGTCAAGGTGTTCCCGGCTGACCTGGAGCAGGCGGAGATGCACGGAGACTCGCAGTACTACATCATGTTCGgGCCCGATATCTGTGGCTACAGCACCAAGAAGGTCCATGTCATCTTCAATTACAAGGGCAAAAATCACCTCATCAAGAAAGAAATCAAGTGCAAGGACGATGAGCTGACGCACCTGTACACTCTGATCCTGCGGCCAGACCAGACGTACGAGGTGAAGATCGACAACGAGAAGGTGGAGTCTGGCACCCTGGAGGAGGACTGGGACTTCCTGCCCGCCAAGATGATCAAGGACCCCGAAGCCAAGAAGCCCGAGGACTGGGACGACCGGGCCAAGATTGATGACCCTGAGGACACCAAGCCTGAGGATTGGGAAAAGCCAGAGAACATCCCCGACCCCGATGCCAAGAAGCCTGAAGATTGGGACGAGGAGATGGATGGAGAGTGGGAGCCCCCAATGATCCCCAACCCTGAGTACAAGGGCGAGTGGAAACCAAAACAGATTGAGAATCCCAACTTCAAGGGAGTCTGGGTTCACCCCGAAATCGACAACCCTGAATACACCCCCGACTCCAACATCTACAAGTTCGACAACATCGGGGTGCTGGGACTTGATCTGTGGCAGGTGAAATCGGGTACCATCTTTGACAACTTCCTGATCGCCGATGATGAAAAGGAAGCCGAGGAGTTTGGAAATGAAAGCTGGGGAGAAACTAAGGAAGCTGAGAAGAAAATGAAGGACAAACTGGACgaggaggagaggaagcagagagaggaggaggagaagaccaaaaaagacaaggaaccagaggaagaggaggacgagGAAGACGATGAGGAAGAAGATGGGAAGGAGGAGGACGAGGTAGAGGGGGATGAAGACGATGGGTCGGATAACGAGACCCCAAGCAAAGACGAACTCTAAACTGTCCGGCAGGCCTCCACTCAGGGGACGGCTGCTGTGCACCTCCACTGGGAATCACACGGGAGTTCAACCCCCACCCTCTGCTGCACTCTTTCCCTCCTTCTCTAATTAGAATTTGTATAATTGACAAACTGCcctagcttttttttttttttttttttttttttttttttaaatttaattttatgatttttattt

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196075 lncRNA downstream 7441 14166179 ~ 14166404 (-) True G155655
TU196072 lncRNA downstream 81388 14089336 ~ 14092457 (-) True G155652
TU196003 lncRNA downstream 289217 13883591 ~ 13884628 (-) True G155593
TU196001 lncRNA downstream 292675 13876723 ~ 13881170 (-) True G155591
TU195941 lncRNA downstream 386211 13786006 ~ 13787634 (-) True G155550
TU196134 lncRNA upstream 121355 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA upstream 121355 14300475 ~ 14305697 (-) False G155701
TU196137 lncRNA upstream 139859 14318979 ~ 14323114 (-) True G155703
TU196154 lncRNA upstream 190641 14369761 ~ 14370182 (-) True G155717
TU196199 lncRNA upstream 243384 14422504 ~ 14424746 (-) True G155754
AMCG00005997 mRNA downstream 2280 14159131 ~ 14171565 (-) True AMCG00005997
AMCG00005999 mRNA downstream 37234 14092900 ~ 14136611 (-) True AMCG00005999
AMCG00005982 mRNA downstream 241041 13926910 ~ 13932804 (-) True AMCG00005982
AMCG00005983 mRNA downstream 248983 13917335 ~ 13924862 (-) True AMCG00005983
AMCG00006004 mRNA downstream 331883 13830917 ~ 13841962 (-) True AMCG00006004
AMCG00005996 mRNA upstream 8128 14187248 ~ 14198914 (-) True AMCG00005996
AMCG00006012 mRNA upstream 70671 14249791 ~ 14256738 (-) True AMCG00006012
AMCG00006014 mRNA upstream 85268 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006013 mRNA upstream 157821 14336941 ~ 14341603 (-) False AMCG00006013
AMCG00006015 mRNA upstream 191289 14370409 ~ 14374943 (-) True AMCG00006015
TU196074 other downstream 2238 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1319042 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1501387 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2819212 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2834731 11336774 ~ 11339114 (-) False AMCG00005877
TU196147 other upstream 157771 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 330113 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 500677 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 603511 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 1254312 15433432 ~ 15436866 (-) True G156088

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00033112 True 2917 mRNA 0.41 9 NC_007113.7 55783896 ~ 55797318 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_11362386_11380216.mRNA False 4461 mRNA 0.47 22 CI01000030 11362114 ~ 11380772 (+)