RNA id: AMCG00005999


Basic Information

Item Value
RNA id AMCG00005999
length 2811
RNA type mRNA
GC content 0.55
exon number 22
gene id AMCG00005999
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14092900 ~ 14136611 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCAACAGGGGAAGATGGCGGCGCTCACGGCTCTCACTCAGGTTGATCCAGGCCACACAGGGAGGGTGGGCCCCACGGaagctgctttgtttttaaagaaatccgGTCTCCCTGACACAACCTTGGGAAAGATCTGGGATTTGGCCGACCCAGAAGGAAAAGGCTTCTTGGACAAGCAGgGTTTTTATGTTGCTTTAAGACTGGTCGCATGTGCACAAAGCGGCAATGACGTGAGCCTTGCCAGCTTAAACCTCACCGTCCCACCCCCCAAATTTAAGGATACCAGCAGTCCCTCACTCAGCACAGCATCATCATCAGGGGAGTCCCACTGGGCAGTGAGGcCGGAAGAAAAGGGGAAATTTGATGGGATTTTTGAAAGCTTAGCACCGGTCAACGGTCTTTTATCTGGAGAAAATGTGAAACCAGTTCTAATAAACTCCAAGCTACCTCTCGATGTCTTAGGAAGGGTTTGGGATCTTAGTGACATTGACAAAGATGGACACTTGGACAAGGACGAGTTTGCTGTGGCAATGCACCTGGTCTATCGAGCTCTGGAGAAGGAGCCCGTACCATCTGTGTTGCCCTCCTCCCTCATCCCCCCCTCCAAGAGGAAGAAGTCGGGCAGCGCTCTCCCGGGCTCCATCGCCGTCCTTCCCGGCGTGGTTCCCGTACTCCCCGCCAGCCCACCACCGCCGAAAGACAGTCTGCGCTCCACTCCCTCACACGGCAGCATGAACTCCCTCAACAGCGCCGGCAGCCTGTCGCCCAAACACACGCTCAAGTCCGCCCAGCCAACAGTGAACTGGGTGGTGCCGGTTGCTGACCGAGGAAGGTATGACGACATCTTCCTAAAAACGGACGCAGACTTGGACGGTTTTGTCAGTGGCCACGAAGTCAAAGACATCTTCATGCACTCAGGGCTTCCTCAGAACCTTCTGGCACACATATGGGCCTTGGCTGATACCAGGCAAATGGGGAAGCTGACAAGGGAACAGTTTGGTTTGGCCATGTACCTCATCCAGCAGAAAGTCAGCAAAGGGATTGACCCCCCCCAGGTCTTGACCCCAGACATGATCCCTCCTTCAGAGAGAGCCACGCCCGTTTCCGACAGCACGAGTTCGGTTGGTTCGGGGGAATTTACTGGAATTAAGGAACTGGATGATATAGGCCAGGAAATCGCTCAGCTACAGAGGGAGAAATATGTGCTAGAGCAGGACATCAGGGACAAGGAGGATGCTATCAGACAGAAAACTAATGAGGTTCAGGAGATGCAGAACGATCTGGACCGCGAGAGCTGCAGTCTACAGGAGCTGGAGTCTCAGAAGCAGGACGCCCAGGACCGGCTAGAGGAGATGGACCAGCAGAAGGCCAAGCTGGAAGACATGCTGAACGACGTGAGGCAGAAGTGCCATGAAGAGTCTCAGATGATCTCCTCGTTACAAACGCAGATCCACTCCCAGGAGTCGGACCTGAAGAGCCAGGAGGAGGAGCTGAGCCGGGCCAAGGGGGACCTGAACCGCCTGCAGCAGGAGGAGACGCAGTTAGAGCAGAGCATCCAGGCTGGGAAGGTCCAGCTGGAGACCATCATCAAGTCCCTGAAGTCCACACAGGATGATATCAACCAGGCTCGGAGTAAACTCTCCCAGATCCAGGAGAACCAGCAGGAGGTGACGAAGAGCATCGATCAGTACAACAGTGCACTGAACGGCACGCACGGCGGCAGCATGACCAACCTCGCCGACATGAGCGAGGGATTCCCGGAGAGGGAGAACGGGGGATTCGGCGCCATGGAGGATCCGTTCAAGGCCAAGGCAGATCCCTTTCATTCAGAGGACCCTTTTAAAACAGACCCATTTAAAGATCCTTTCGGCGGAGATCCTTTCAAAGAGAGCGATCCCTTCAAGAACTCATCGTCGGACGATTTCTTCAAGAAAACGCCCAAGGCAGACCCCTTCACCTCCTCCGATATTTTCAGTAAAGGCGCCACGTTGCCCGCGAAGTCTGGTCACTTCGGCAGCAGTGATCCTTTTGTATCTACAAGCCCAAAACCCAAAGGACCAGACCTCTTTGGCACATTGGACCCTTTTGGAAGCGGCTCCTTTGGAAGCAACAGCGGGTTTGCAGACTTCAGCCAAATGTCAAAGAGCCCAACGCCTCACGCGGATCCGTTTAAATCATCTCTCGGGGGGCAGGGGTTCTCGGAGGACCCCTTCAGAGGAAAGCTGGACACCCCTGCACTGCCGCCCAAGAAAAACGTGCCTCCACGACCGAAACCTCCCAGTGGTAAGAGTACTCCAGTAAACCTGCCTGGGTCTGGGGACTCGTCCAAGCTGAGCGATCCTTTCCAGCCGTTTGGCGCTGACGCCAGCGACCCGTTTCAAAGTAAAAAGGGGTTGGGAGACCCGTTTAGCGGCAAAGATCCTTTTGCTCCTTCCTCCTCAAGTAAAGCTTCTAAAGACTCTTCCTTGGGTTTTGCAGACTTCAGCTCTTTTGGAAATGAGGCGCAGCAGTTGGAGTGGGCGAAGCGCGAGAGCGAGCGGGCGGAGAGGGATCGCCTGGAGCGTCTGCGGAGACAGGAGCAAGAGGACCTGGAGCTCGCCATCGCGCTCAGCAAGGCCGAGATGTCCAACGCATGAGCCCCGCTCGGCCGCCGCACTGGAGCCAACGCATCAATGTGTAAAAAACCTCACAAAACAACTCTAATACACACAACTATCAGACTGTCTGTGAATGTCAAGAATTCAACAGAACACTGAGTTGGAAGAGAAAGGAGAATCATGAATGGGTCTGTTTTACGATGTATATCGGGT

Function

GO: NA

KEGG:

id description
K12472 EPS15; epidermal growth factor receptor substrate 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196072 lncRNA downstream 443 14089336 ~ 14092457 (-) True G155652
TU196003 lncRNA downstream 208272 13883591 ~ 13884628 (-) True G155593
TU196001 lncRNA downstream 211730 13876723 ~ 13881170 (-) True G155591
TU195941 lncRNA downstream 305266 13786006 ~ 13787634 (-) True G155550
TU195905 lncRNA downstream 394366 13665734 ~ 13698534 (-) True AMCG00005971
TU196075 lncRNA upstream 29568 14166179 ~ 14166404 (-) True G155655
TU196134 lncRNA upstream 163864 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA upstream 163864 14300475 ~ 14305697 (-) False G155701
TU196137 lncRNA upstream 182368 14318979 ~ 14323114 (-) True G155703
TU196154 lncRNA upstream 233150 14369761 ~ 14370182 (-) True G155717
AMCG00005982 mRNA downstream 160096 13926910 ~ 13932804 (-) True AMCG00005982
AMCG00005983 mRNA downstream 168038 13917335 ~ 13924862 (-) True AMCG00005983
AMCG00006004 mRNA downstream 250938 13830917 ~ 13841962 (-) True AMCG00006004
AMCG00006005 mRNA downstream 265314 13814192 ~ 13827586 (-) True AMCG00006005
AMCG00006003 mRNA downstream 292070 13793362 ~ 13800830 (-) True AMCG00006003
AMCG00005997 mRNA upstream 22520 14159131 ~ 14171565 (-) True AMCG00005997
AMCG00005998 mRNA upstream 37234 14173845 ~ 14179120 (-) True AMCG00005998
AMCG00005996 mRNA upstream 50637 14187248 ~ 14198914 (-) True AMCG00005996
AMCG00006012 mRNA upstream 113180 14249791 ~ 14256738 (-) True AMCG00006012
AMCG00006014 mRNA upstream 127777 14264388 ~ 14272009 (-) True AMCG00006014
TU195614 other downstream 1238097 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1420442 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2738267 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2753786 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2767833 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 31479 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 200280 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 372622 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 543186 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 646020 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041335 False 2803 mRNA 0.53 25 NC_007133.7 15912253 ~ 15957079 (-)