RNA id: AMCG00006004


Basic Information

Item Value
RNA id AMCG00006004
length 4121
RNA type mRNA
GC content 0.50
exon number 13
gene id AMCG00006004
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13830917 ~ 13841962 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCaggcactgaaacacacacGGGTGAAGGCCACAGAGTCACGCACACGCAATTTCACCACTGAAATTAGGTCACGCTCCAGGAAATTCACTCCAGGACTTGGACTTGCCGTGATTGACGTGGGTCAGGGGGGCGGGGTGTCACATGTAGTTCACATGGCGCTCACGGGATGGTCAGGTGGACTAGcTCCCTCTTGCCCGAGGACCATGGGGACCACCGAGGCCACCCTGCGCATGGAGAACATGGAGGTGAAAGACGAGTGGCAGGACGAGGATTTCCCCAGACCCCTTCCAGAGGACGGCGAGATGGAGACATCCTGCAGCCTCACAGACAACAGGAACTCTCCCCCCAGCTCCCTGAACGTGGGCGGGGGGGGCGGAGGCAGCTCCCGAAAGCGGCGCACGCTGGTGGCCCCCGAGATGAACCTGTCCCTGGACCAAAGTGAGGGCTCGCTGCTCTCTGACGACTTCCTGGACACCCCGGATGACCTGGACATCAACGTGGACGACATCGAGACGCCCGACGAGACCGACTCCCTGGAGTTCATCACCAACGGCAACGAGCTGGAGTGGGAAGATGACACCCCGGTGGCCTCGGCGAAGGCCCCACCCAATGAGGGGGCGGgcgggggggaggagggggcagggggggcgGGCGCCAACGGGCGTCTGTGGAGGAGCGTCATCATCGGGGAGCAGGAGCACCGCATCGACATGCAGGGCCTGAACGCTATCATCGTGTTCGCCGCCTGCCACCTCCCGGACAGCAGCTGTGCCGACTATCACTACATCATGGAGAACCTCTTCTTGTACGTGATCAGCAGTCTGGAGCTCCTGGTGGCCGAGGATTACATGATTATTTACCTGAACGGCGCGACTCCGCGGAGAAGGATGCCCGGGATTGGCTGGCTGAAGCGGTGCTATCAGATGATTGACAGGAGGCTGCGGAAGAATCTGAAGTCTCTGATCATCGCCCACCCTTCCTGGTTCATCCGCACCGTCCTGGCCATCTCCAGACCTTTCATCAGTGTGAAGTTCATGAATAAGATCCGTTACGTGCACAGCCTGCAGGAGCTGGAACAGATCATCCCCATGGAGCATGTGCAGATCCCGGAGTGCATCCTGCAGTATGAAGAGGAGAGAATTCAAGCTAGGAAAGAGAGGATGGAGCaagaacagcaacagcagcagcagcagcagcagcagcaacaacagccaCCGGCACCTGCGCCGgcacctgcagagagagaaagGGAGGATTCAGTTTGCAATCAGGCggaaagagaagaaaactaATGTTCGCAGCCAGGGTGAGAGGAaggcaaaacagaaacaacaacaagaaaaggaagATCAATcctgtcatttttttcatttctttatttgtattaagagAACTGAGACCTTCCATCGATCAATCAATGAGCTCCCATCCCCGCTACTATTCCTGACCCCACCCCCTCACGCCCCCCATTCCCAACGGACCAATCCGGTGGCATTCTAACGTTACCATTCCCACTCGGAGCAGGAGGACTGGGTGCACAGATCAATGTATTTTACTATCTGTCAAGGCATGATTAATTTTGCAAGTATATCCCTACAgcaaatttgtattaaatccCCAAATGAACTGTTAATGTATCTCTTACATAATTAGTTCCAGATATTCCCCGTGGAAAAGCAAAAAGTACATTACACTATTGGGAAGGTGGCTATTCTGTGAGAGGAACAAAAACTATCAAGAATAACCCTCAACACGTCACTACCACGCTGGTCATTCTCCGCAGATGGTGTGTGGTTATAGTCATGGCTGAGGAATTCTGGGAAGGAAATGAAGCTGGAATGGcccttccccctctctgcaCTACGGTTCTTCTTCtttgagagagtgagagagacagaccggACATCTCTAATTTCTGCAGAGTGGAGGGAAGATGGCATTGATGGGAGAGAGGGCCCCCTTACACTATACAGATTCCCTTGACTGAGAGGATAGTGGACAGTGCCCCCTGCTGGGCGGACAGAGCAAGGCCACTCGCAACTCCACACTCCTTTCACAAATCCAATCCTGGGACCAGTACACCTCCCCCGCAAACCTggcctcatttaaaaaaaactcacgTTAAGCTGCCACAATATTTCCTTACCTTTTGTTTAACCCAGACAGCAGCCACCTAGTGCGTCAGTTTAATCCTGTCTCTGATATTTCCCCGGAATTGAGGCGTCATACCTTGGATTTGCACCGACACTGTCAGAAGGGACAATCGATAAAGCCAAGAAGACCCATTTGGGGGAAATTGTCATCTGCGTAGATGTTCTGTACCATCCAATAAGCACCTTACTTATAGTTATGTATAGTGGTACACGAGGAACAGTGGGTTTGGTTCTTGTACCAGTCATTTTGGGTGTAAAATGTGATTTGTACATCagtcttgtatttcttttcaaatttaCTTACAATCTACAGTACTATAACTAGCGATTTCTGTCGGCTTCACAGTATAAATGAACACCGCTATTCATATGAGTGGGAATCTTTTAGTATCTCCGAGTGCTGACTGTCAATTCCACATTCCTCTCCAGTGTGAGTATCCAGCCCCATTGTAAATCCTTCATTTGTTAGCTAATACTTTGACAAGCCTGGGGAATGGGGGGTGAATAGAGGAcaactgtgtttatttattttcattttgtaaaaaggACATATAGTCAATTGCACTATCAAAGAAATCAACCCACATGGTTTATTACTGCCGTGGATGAGAGTTTAGGAAGGAACTGTCAAAAGAAGCCAACcaacctttttttcttccaaaactaaaaaaaacgaTGGACCATCTGTGATGTCACACCAGTAGTGCGCTTGTATATACTGCCCCCTTCTTTCCCTGCGTGTTTTATTGTCTTTCAAATTGCAATTTGAGAAGCCTTGTGACAAACCAAGCATGCTTCGTGAGCAGCTGTGTTTTCTTTCCAGGTACGCTGTCGATGTGCAACTTCGTCCACCCTTCTCTGGTGTGTCAACACAGAGTCAGATCGCCAGCCGTccttgctgtgtgtgtctgtacggGCTGAGCCTCTCCGCACGCTGGCACTCTGCCACTCTGCCACTCAACCACGTGCGTGAGAGGACAAAGCACCGTTTCACTTACAGCTGTACGGAAGATCTAGCAAAGCAGAAGGAGTAGTGCGCCACTTCTTCCAAATACGGCCCTACTTTATCTTGATCCCCTCTCACGTGCTTAGCCTGTGCTGACCCATTCCTTTCAAGGCGCAGGAGTCATCGAAAAGGAGTCGATAAGCCGCTGTCGGCAAAGGGAACTGATAACACCGccaagcagggctacagaggtgaAGAATAACGTCCGGCACAGGCAGTCAGGAAGGGGTTCGGTGATACCCAGGTGGTCTGGCGGGGACAAGGATGGGGACAGGAGGACGTTATCCTATCCGTTTAGTTCCTGCGTAACCCTTTGTGCCAAAAACCTCACAGAGTGTGATTTGATAGACAGGGGCTTCGTGGCGGAGAAGAACACCGTCTGCAGACAATCGGTGAGGGTCCCCTGCCTTCCTCCTTCTCGGTGAAAAAAGGACCTTCATCTTGATTTCAGGCTGTCCATAATGtaaatacttttcatttcagGTGTTTCTCTAAAGGACCAATCTGACAGTTTCTTTTTGTGGATTCGCACTCTCCAAAAACATCTCTTTAGTGACATTTTGGAAGGCATTTTGTTTGGTGAAACTGGGGTTTGTTGAAGCCAAGTCTGAGATCCtcattaaatgtgttaataatgtgtggTGTTGGACTcctaaatcaatttaaaaaaatctgaaaacatcaaTGTTACAAACCaggctttcatttcatttgatgAGGATAGAGCTGGAGGAGGGGGGCGGTCCATGTTTGCTGTGAAGTTGTGTTGTTGAAAGTTCaccattttattaaaacctcatttttttgttccaaatcATTCATTTTGTAGCTTCAGTACTGATATGCCAAGCTTTTTCTCCTAGAAGCACATCCACAAGATGACCTGCCATCAAGTACCTCAAATTCCATGAACAGATTCTGACCTTTAATCTTTTAAGTGCGGGCTGAACTcgac

Function

GO: NA

KEGG:

id description
K18450 ATCAY; caytaxin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195941 lncRNA downstream 43283 13786006 ~ 13787634 (-) True G155550
TU195905 lncRNA downstream 132383 13665734 ~ 13698534 (-) True AMCG00005971
TU195906 lncRNA downstream 136815 13664064 ~ 13694102 (-) False AMCG00005971
TU195907 lncRNA downstream 153580 13675209 ~ 13677337 (-) True G155521
TU195898 lncRNA downstream 252118 13568579 ~ 13578799 (-) False AMCG00005977
TU196001 lncRNA upstream 34761 13876723 ~ 13881170 (-) True G155591
TU196003 lncRNA upstream 41629 13883591 ~ 13884628 (-) True G155593
TU196072 lncRNA upstream 247374 14089336 ~ 14092457 (-) True G155652
TU196075 lncRNA upstream 324217 14166179 ~ 14166404 (-) True G155655
TU196134 lncRNA upstream 458513 14300475 ~ 14305697 (-) True G155701
AMCG00006005 mRNA downstream 3331 13814192 ~ 13827586 (-) True AMCG00006005
AMCG00006003 mRNA downstream 30087 13793362 ~ 13800830 (-) True AMCG00006003
AMCG00005972 mRNA downstream 45032 13772482 ~ 13785885 (-) True AMCG00005972
AMCG00005969 mRNA downstream 69487 13751988 ~ 13761430 (-) True AMCG00005969
AMCG00005970 mRNA downstream 112489 13714984 ~ 13718428 (-) True AMCG00005970
AMCG00005983 mRNA upstream 75373 13917335 ~ 13924862 (-) True AMCG00005983
AMCG00005982 mRNA upstream 84948 13926910 ~ 13932804 (-) True AMCG00005982
AMCG00005999 mRNA upstream 250938 14092900 ~ 14136611 (-) True AMCG00005999
AMCG00005997 mRNA upstream 317169 14159131 ~ 14171565 (-) True AMCG00005997
AMCG00005998 mRNA upstream 331883 14173845 ~ 14179120 (-) True AMCG00005998
TU195614 other downstream 976114 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1158459 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2476284 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2491803 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2505850 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 326128 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 494929 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 667271 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 837835 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 940669 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040035 True 2206 mRNA 0.44 11 NC_007133.7 5106751 ~ 5116624 (+)
grasscarp (Ctenopharyngodon idella) CI01000030_10987288_10989182.mRNA True 2408 mRNA 0.43 9 CI01000030 10986291 ~ 10989624 (-)