RNA id: TU196147


Basic Information

Item Value
RNA id TU196147
length 789
RNA type TUCP
GC content 0.47
exon number 4
gene id AMCG00006013
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14336891 ~ 14341603 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGTGTGTGTGCAGTTGACACGCCAGGGGTGTTAGTGTTACTGCACTTTGACAGAGCCTCCACACACCGCAGGACACTGATCAACAGCAAATACAACATGCCGCTCGCGATGGACCTGATGCACCCCTCCTATGAGGCGGAGAGGAGGAGGCACAAGAAGAAGAGGCTGGTACAGAGTCCCAACTCTTACTTCATGGACGTGAAGTGTCCAGGCTGCTACAGGATCACAACTGTCTTCAGCCACGCGCACAGAGTGGTCCCGTGTGCCGGCTGCTCCTACGTCCTGTGCCAACCCAAAGGAGGGAAGTGCCGCCTCACTGAAGGctgctctttcagaagaaaacaacactgaGCCATTCTAATCCCACACTTCTACCGGAAGATCTGTCCATTTCTCTGCCTGCGTCTCTACTTGGGGCAGTCGCCACTGGCCAGGCTTGATCGACACAAAGGCGATGattcagaaaagaaaagggtgaaaaaatgaataaaaaggaaATCAGTGAGTTGGGGAGGTGGTTCTGAATGAAGACTGATTTTACTGCGAATTGTATGGATCTGTGATTGCACTATGCACAAGAACGCACTCCGTAAAATTCTTCTCTCTACAACTTGAAATGCTCCCAAGGCATTTTTGAGTAGTGTCATGGGATTGTTAATGGGGAACATATCTTGCATTTGCACTTTCTGTATCTAAACATCTTAATAAACTTAATAAAGGCTCAGTTTTAAACTCAACTGAatcagtgtgtctgttttaGGATGAAGTATTAAATGTTGTATAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196137 lncRNA downstream 13777 14318979 ~ 14323114 (-) True G155703
TU196134 lncRNA downstream 31194 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA downstream 31194 14300475 ~ 14305697 (-) False G155701
TU196075 lncRNA downstream 170487 14166179 ~ 14166404 (-) True G155655
TU196072 lncRNA downstream 244434 14089336 ~ 14092457 (-) True G155652
TU196154 lncRNA upstream 29098 14369761 ~ 14370182 (-) True G155717
TU196199 lncRNA upstream 81841 14422504 ~ 14424746 (-) True G155754
TU196218 lncRNA upstream 148627 14489290 ~ 14491929 (-) True G155768
TU196235 lncRNA upstream 228899 14569562 ~ 14569836 (-) True G155783
TU196367 lncRNA upstream 639721 14980384 ~ 14981621 (-) True G155899
AMCG00006014 mRNA downstream 64882 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006012 mRNA downstream 80153 14249791 ~ 14256738 (-) True AMCG00006012
AMCG00005996 mRNA downstream 137977 14187248 ~ 14198914 (-) True AMCG00005996
AMCG00005998 mRNA downstream 157771 14173845 ~ 14179120 (-) True AMCG00005998
AMCG00005997 mRNA downstream 165326 14159131 ~ 14171565 (-) True AMCG00005997
AMCG00006015 mRNA upstream 29746 14370409 ~ 14374943 (-) True AMCG00006015
AMCG00006028 mRNA upstream 43007 14383670 ~ 14391108 (-) True AMCG00006028
AMCG00006029 mRNA upstream 52791 14393454 ~ 14401173 (-) True AMCG00006029
AMCG00006027 mRNA upstream 101247 14441910 ~ 14445493 (-) True AMCG00006027
AMCG00006026 mRNA upstream 112355 14453018 ~ 14458341 (-) True AMCG00006026
TU196074 other downstream 165284 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1482088 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1664433 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2982258 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2997777 11336774 ~ 11339114 (-) False AMCG00005877
TU196220 other upstream 168570 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 339134 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 441968 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 1092769 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 1148739 15489402 ~ 15491642 (-) False G156088

Expression Profile