RNA id: AMCG00006015


Basic Information

Item Value
RNA id AMCG00006015
length 564
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00006015
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14370409 ~ 14374943 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAACAAGCAGACCATCTTCACAGCACAGCAGCTAGACGCTTATCAGGACTGTACGTTTTTCACCAGAAAAGAAATACTAAGGCTCTTTCACCGCTACCGAGACCTGGCACCTCAGCTTGTTCCGCTCGACTACACGGGCAAGCCAGATGTGAAGGTGCCATACGAGCTGATTGGCAGCATGCCAGAGCTGAAGGACAATCCCTTTCGCCAGAGGATAGCGGAGGTTTTCTCAGAAGATGGAGAGGGAAACATGACCCTGGACGATTTCTTGGACATGTTCTCAGTACTGAGTGAAATGGCACCAAGGGATCTGAAAGCATACTATGCTTTTAAAATTTATGACTTCAACAACGATGACTTCATCTGCAAGTCGGACCTGGAGAAGACGCTGAACAAGCTGACACGCAATGAGCTGACCCCCGAGGAGGTGCGGCTGGTGTGCGAGAAGGTCATCGACGAGGCCGACCTGGACAACGATGGGCGGCTCTCCCTGGAGGACTTCCAGCACATGATCGTGCGCGCACCGGACTTCCTCAGTACCTTCCACATCCGAATATAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23838 CIB3; calcium and integrin-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196154 lncRNA downstream 227 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 47295 14318979 ~ 14323114 (-) True G155703
TU196134 lncRNA downstream 64712 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA downstream 64712 14300475 ~ 14305697 (-) False G155701
TU196075 lncRNA downstream 204005 14166179 ~ 14166404 (-) True G155655
TU196199 lncRNA upstream 47561 14422504 ~ 14424746 (-) True G155754
TU196218 lncRNA upstream 114347 14489290 ~ 14491929 (-) True G155768
TU196235 lncRNA upstream 194619 14569562 ~ 14569836 (-) True G155783
TU196367 lncRNA upstream 605441 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 606160 14981103 ~ 14981621 (-) False G155899
AMCG00006013 mRNA downstream 28806 14336941 ~ 14341603 (-) False AMCG00006013
AMCG00006014 mRNA downstream 98400 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006012 mRNA downstream 113671 14249791 ~ 14256738 (-) True AMCG00006012
AMCG00005996 mRNA downstream 171495 14187248 ~ 14198914 (-) True AMCG00005996
AMCG00005998 mRNA downstream 191289 14173845 ~ 14179120 (-) True AMCG00005998
AMCG00006028 mRNA upstream 8727 14383670 ~ 14391108 (-) True AMCG00006028
AMCG00006029 mRNA upstream 18511 14393454 ~ 14401173 (-) True AMCG00006029
AMCG00006027 mRNA upstream 66967 14441910 ~ 14445493 (-) True AMCG00006027
AMCG00006026 mRNA upstream 78075 14453018 ~ 14458341 (-) True AMCG00006026
AMCG00006018 mRNA upstream 117062 14492005 ~ 14507388 (-) True AMCG00006018
TU196147 other downstream 29746 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 198802 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1515606 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1697951 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 3015776 11349245 ~ 11354633 (-) False AMCG00005879
TU196220 other upstream 134290 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 304854 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 407688 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 1058489 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 1114459 15489402 ~ 15491642 (-) False G156088

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000075_00267234_00274802.mRNA True 682 mRNA 0.46 6 CI01000075 267116 ~ 274802 (-)