RNA id: AMCG00006018


Basic Information

Item Value
RNA id AMCG00006018
length 2805
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00006018
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14492005 ~ 14507388 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGGCAGAGACGCAGCAGGTGTCTGCCTTCCCCACCCGCCCGAGCTGCTGAAGATGCCTTAACCTCTCCTTCCCACTCACAATCACCACAATCCAGCATTTTCCAACGGGAGGAAAGCTcttacactacacacactaggGCCACACAAGGGGAACTGTCTGTGGTTTCTTgactgccaaaaaaaaagacaaagaaaacaaaaaatacagagaaaagatAAGTCGGTTCCGTTTTGTACCCGGGTTTGTGTTTTCCACCCAGCTTCTCTGGCTGTCTTCTCCTGTAGTAACACCAGGACTTCTTACCTTGTGAAAGACTGCGTGGGAAACTTCCATAAGAGAGAAGTTTCTCACGAGACCTATTTGCTAGACCAGGTGCTGGAGCTGATTATGAATGAGAGGCCTACCAACGCCAACAGCTTGTTTCTGAACGAAGACTCCGACAAGCACTTGCACCCTGACCGTGGCTTCCAGAGGCTGCGCAAGGCCATGCAGAAGAAGGCATCTCGAGCTCAGGAGAAAATGACCTCCATCACCAGGGATAGCATCAAGAACTTCCTGCGGAGGAACGCCTTTGTGCTGTTCACCGTGGCCGCTGTAATAGTAGGAATCATGATGGGCTTTGGTTTGCGACCTTATGACATGTCTCTAAGGCAGATCAAGTACTTTTCGTTCCCTGGTGAACTGCTCATGAGGATGTTACAAATGCTGGTCCTGCCACTTATTGTGTCAAGTCTTGTGACGGGCCTCTCCTCTCTGGACAGCAAAGCCTCAGGGAAGATGGGTATACGAGCCGTAGTGTACTACATGGTCACCACAGTGATCGCCGTGTTCATTGGCATCGTCATGGTGATGATCATCCGGCCTGGCAAAGGACACAGGGACAGTCCGACGCCCACCAGCAGCAGCATAGAGCAGGTCCAGGCCACGGATGCATTCTTGGATCTCATCAGGAACATGTTCCCTCCCAACCTGGTAGAAGCATGTTTCAAACAGTACAAAACCCTCTACACCAAGAGGGTGTACAAGAGGAACATCACGGCGGCAGTGAACCTCACCGACATTGCCAACGTCACAGAGTCCCCCATCTTGATCAACATCAGTGGGCTTCTCCAAGGGATGCAAGAGACCATCACTGTGGAGGAGATCATCCCTATCTCTGGCTCCTCCAATGGAGTCAACGCGCTGGGCCTGGTGGTCTTCTCCATGTGCTTTGGGCTGGTGATCGGGAGCATGAAGCAGCAGGGGCAGGCGCTGCGCGAGTTCTTCGACTGCCTCAATGAAGCCATCATGCGCCTGGTGGCCATCATCATCTGGTACGCTCCTGTCGGCATCCTGTTCCTCATCGCTGGGAAGATCCTGGAGATGAAGGACTTGGCTCAGGTTGGGGGCCAGCTGGGAATGTACACTGTCACGGTCATCGTGGGCTTGCTGGTCCACGGCCTCTTCGTTCTCCCGCTGCTCTACTTTGTCGTCACGCGCAAAAACCCCTTCACCTTCATTACCGGGCTACTGCAGGCCCTCATCACTGCCCTGGGGACCTCTTCCAGCTCCGCCACCCTCCCAATCACTTTCCGCTGCCTGGAGGAGAACAATGGCGTGGACAAGAGGGTGACCCGGTTTGTCCTCCCAGTGGGCGCCACCATCAACATGGATGGCACGGCCCTGTACGAGGCTGTGGCTGCCATCTTCATTGCCCAGGTCAACCACATGGACCTCAATTTCGGCCAGATCCTCACCATCAGTATCACAGCCACCGCAGCCAGCATTGGAGCAGCTGGAATCCCTCAAGCTGGTCTGGTAACCATGGTGATTGTATTGACATCCGTGGGACTGCCTACTGAGGACATAACGCTGATCATTGCAGTGGATTGGTTCTTGGATCGCCTACGGACCACAACCAACGTGCTGGGAGACTCGCTGGGCACGGGCATCATCGAACACCTCTCCCGGCATGAGCTGCAGACACAGGACGCTGAGATCGGGAACTCCGTCATCGAGGAGAACGAGAAGCCGTACCAGCTCATCTGCCAGGAGAACGACGCACAGAAGCACCGCAACAGCGAGACCATCATGTGAGCGCCCACCGACCAATCAACTGCCTGGTCAGCCGACCAGCTGACCGGATCTGACCACTCTTTCAATAAAAAGGCACGGGGGACCATTAATGGGAAGAGGATGGTGTCAATACAGATTCACAGAAGGAAGACAGATGATGGTATTCCCCCAAAACACCACTTTCCCTTCCCGTCTTTGTGGCTCACTTCCCAAAAATCATCTCCCTCTTCCATTACGCTATTCTTGTTGTCCAcggcaaaaacattttttaaatttgtgtttttttattcccacgttttattcatgaaaaaaTTGAACTCTTGATGTTCCAAGAACAAAATGGTATGATAAATTGTAAATCTGGTTTGTAGCAGATGGCTTTAAGTATGCATTGCTGCTTTTCATTCAGAAAATAGGTGTGAGGTGGCTATGATAATCCACTGatgaacattgttttttttaatgaccaaATGACACAAATAACAGTatagaaaacaacaatgcaAGTGCTGCAAATATTCTTGTTTGAAAATAGTCCTGTATCTTATGCTCATGTGCTCACCCCCATCTCAGTCTACATAAAGCATTCTGTAAAGACTCACATGATTAGTAAAGTAGTGATGCAGGGTTGagttattacaattatttaaattctgaTTTTCTTTCCAGGGACATACTCATGTTTTTTTGCATGAAGTATTTTACCCAGTCTGCTGCTGCTCACAgctctttacattttcagtccTG

Function

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05614 SLC1A3, EAAT1; solute carrier family 1 (glial high affinity glutamate transporter), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196218 lncRNA downstream 76 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 67259 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 121823 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 168891 14318979 ~ 14323114 (-) True G155703
TU196134 lncRNA downstream 186308 14300475 ~ 14305697 (-) True G155701
TU196235 lncRNA upstream 62174 14569562 ~ 14569836 (-) True G155783
TU196367 lncRNA upstream 472996 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 473715 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 495022 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 592921 15100309 ~ 15105533 (-) True G155957
AMCG00006026 mRNA downstream 33664 14453018 ~ 14458341 (-) True AMCG00006026
AMCG00006027 mRNA downstream 46512 14441910 ~ 14445493 (-) True AMCG00006027
AMCG00006029 mRNA downstream 90832 14393454 ~ 14401173 (-) True AMCG00006029
AMCG00006028 mRNA downstream 100897 14383670 ~ 14391108 (-) True AMCG00006028
AMCG00006015 mRNA downstream 117062 14370409 ~ 14374943 (-) True AMCG00006015
AMCG00006020 mRNA upstream 38792 14546180 ~ 14546493 (-) True AMCG00006020
AMCG00006019 mRNA upstream 39556 14546944 ~ 14549687 (-) True AMCG00006019
AMCG00006035 mRNA upstream 81983 14589371 ~ 14593370 (-) True AMCG00006035
AMCG00006039 mRNA upstream 140201 14647589 ~ 14651753 (-) True AMCG00006039
AMCG00006036 mRNA upstream 153197 14660585 ~ 14662509 (-) True AMCG00006036
TU196147 other downstream 151342 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 320398 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1637202 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1819547 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 3137372 11349245 ~ 11354633 (-) False AMCG00005879
TU196220 other upstream 1845 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 172409 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 275243 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 926044 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 982014 15489402 ~ 15491642 (-) False G156088

Expression Profile