RNA id: AMCG00006027


Basic Information

Item Value
RNA id AMCG00006027
length 1416
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00006027
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14441910 ~ 14445493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAGGAGGAAGAGTGTGAGGACTGGCAAGGGAAAGGTTCTCTGGGCTAAAGCTCGCGAGGGGATGCATCCACGGTACAGAGACGTCTCTCCACGGATCAGGCGTGTGGAGGATCGCCGGGCGAAGGAGAGGAAGGACGAGAGGGACACCATTAAAGAGGCACTGTGCCTGAAGCCAATCCTGCtaccccagcagcagcagaaagaCCAGCCAGAGGAACGTCCGGTGTTGCACACAGCCTTCGAGAAGGTCGTCTATGACATGACCCACAATGAACGTGTGATCAATGAGATGACCCTCGGGCGACGGATTGGCTTTTACGAGCTGCGAGGGGAGATTGGCACTGGTAACTTCTCCCATGTCAAACTGGGAATCCATGCGCTGACCAAAGAAAGGGTTGCTATCAAAATCCTGGACAAAACCCGCCTGGATAAGAAATCGCAGAGTCTGTTTGCATCCGAGATCTCCTGCATGGAGAGACTGTCGCACCCGAACATTGTCCGTCTGTATGAGGTGCTGGAGACACTGAAGAGGCTGCACCTGGTGATGGAGTACGCCAGCGGAGGGGAGCTCTTCTCCCGGATCACCACCAAGGGGCGACTGTCAGACCTGGAGAGCAGGCTCATCTTTGCTCAGGTCATCTCGGCAGTCAAGCACATGCACGACAACAATATTGTACACAGGGATCTGAAAGCTGAGAATATTTTCTACACGACCAGCTACTGCATCAAGATCGGCGATTTCGGCTTCAGCACAGTCTGCAGCCCCACCGAAGTCCTTTACACATGTTGCGGCTCTCCGCCGTACGCCGCCCCCGAGCTCCTTAAGGAGAAGGGCTATGTCGGGCGCTATGTGGACATCTGGGCCCTGGGAGTCCTGCTGTACTTCATGGTCACAGCCACCATGCCCTTCAATGCTGACAACCTGGGCCGGCTCAAGCGATGCATCCTGCAGGGCTCGTACGCCATCCCAGCCTACGTCTCGGAGGCCTGCCAGCAGGTTATCAAGGGCATGCTGAGAGCTGTCCCTGCCGACCGGACTTCCCTTTCCCAGATCATGAGTTGCACCTGGTTGAATGGCGTTGAATTCCCCCAGCCTTACCCCTCTTTCCACCTCACCCCCACCTACCTGACCCAGCCCCTACCCCTTGggcaggaggagcaggaggtGAAGAGTGCCCTGACGTACCTGGGGATCACAGAGGCCCACCTCCAGAACAACAATTGTGGAGACTCCCGCAGCCCCATCACGGGAGCGTACCGCATCCTTCTGCACCGCATCCTGAAGCGCAGGTCCGTGGAGGCCGTGGGCTACTTCGCCATGTGTCCCAACGAGTGCGTGTCCGGGAGGCGTTGTAGGCGCAACACGGCCATAGAGAAGCACAACCCATCGGCCGTGTGCCTCCTCCTTTAG

Function

GO: NA

KEGG:

id description
K16310 NIM1; serine/threonine-protein kinase NIM1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196199 lncRNA downstream 17164 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 71728 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 118796 14318979 ~ 14323114 (-) True G155703
TU196134 lncRNA downstream 136213 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA downstream 136213 14300475 ~ 14305697 (-) False G155701
TU196218 lncRNA upstream 43797 14489290 ~ 14491929 (-) True G155768
TU196235 lncRNA upstream 124069 14569562 ~ 14569836 (-) True G155783
TU196367 lncRNA upstream 534891 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 535610 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 556917 15002410 ~ 15004191 (-) False AMCG00006102
AMCG00006029 mRNA downstream 40737 14393454 ~ 14401173 (-) True AMCG00006029
AMCG00006028 mRNA downstream 50802 14383670 ~ 14391108 (-) True AMCG00006028
AMCG00006015 mRNA downstream 66967 14370409 ~ 14374943 (-) True AMCG00006015
AMCG00006013 mRNA downstream 100307 14336941 ~ 14341603 (-) False AMCG00006013
AMCG00006014 mRNA downstream 169901 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006026 mRNA upstream 7525 14453018 ~ 14458341 (-) True AMCG00006026
AMCG00006018 mRNA upstream 46512 14492005 ~ 14507388 (-) True AMCG00006018
AMCG00006020 mRNA upstream 100687 14546180 ~ 14546493 (-) True AMCG00006020
AMCG00006019 mRNA upstream 101451 14546944 ~ 14549687 (-) True AMCG00006019
AMCG00006035 mRNA upstream 143878 14589371 ~ 14593370 (-) True AMCG00006035
TU196147 other downstream 101247 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 270303 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1587107 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1769452 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 3087277 11349245 ~ 11354633 (-) False AMCG00005879
TU196220 other upstream 63740 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 234304 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 337138 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 987939 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 1043909 15489402 ~ 15491642 (-) False G156088

Expression Profile