RNA id: AMCG00006028


Basic Information

Item Value
RNA id AMCG00006028
length 2031
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00006028
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14383670 ~ 14391108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGATGCCCTTGCAGCAGGCTGTGCTCCGGGGAAGATGAGCGCCGGGCGGCCCCTCTCAGTCCTGGCCCTCCTGGCTGTGGCCCTGCGGCTCTGCGATgccagtgtgtctctgtctgtgcctTCCACTGTAGCCCTGGAGATCGGAAGTTCGAAGAATGTGACCATGGTGCCAAGTGCTCCGTTAAGTGTGGCAGCTGCCATTACCTTAAACGTAACCTTCTCCTCGAAAAATGCCTCCATTGTTAAGCTGCCAGAGCAGGTGGTTTTGCCTGCTGAAGAAACCTCCATAAGCTTTGAGGTGCAGGCACTAGATGTTGGGCAGGTGACCGTTCATCTAAGCAGCAACACCACTAATCTTACAAGGCGAGTTATTGACATTCTCACCAGAATCCGCTTTATGGTTGTACGAAGCAACGTCCTCGACATCATCAGCCAAGTGATCGGCTGGATTTATTTCCTGGCTTGGTCTATTTCTTTTTACCCCCAAGTCTATGAGAACTGGAGAAGAAAAAGTGTGGTGGGGCTCAATTTTGACTTCCTGGCGCTCAATTTGACTGGATTTATTGCATACAGCATTTTCAATGTCGCTCTCTTCTGGGTGCCCTATGTGAAAAACTACCAACTTCCTCCCTCTCACCTGCACCTTCTCCTTGCCCAGGAGGAATTCCTGAAATCCGACCCCAAAGGCAGAGGAGGCCAGAGAGTGTCCAAGGTGGCCATCGCCCTCCTGGTGATCGCCTGGGCCTTCGCGCTCTTCACTCTCTTCGTTGCGGTGGCCAATAAGATCAGCTGGCTGCAGTACCTCTACTACTTCTCCTACATCAAACTGGGTGTTACGCTGGTCAAATACATTCCTCAGGCCTACATGAACTACCAAAGGCAAAGCACAGAGGGCTGGAGCATCGGAAACGTTCTACTGGACTTCACCGGAGGGAGTTTCAGCATTATCCAGATGATCTTGCAGTCCTACAACAATGATCAATGGAGGCTGATTTTTGGAGACCCTACCAAGTTTGGTCTAGGGTTATTTTCTATATTCTTTGACATTTTGTTCATGGTTCAGCACTACTGTTTATATCGGCACAAAGCCCTCGAGTACCAGGGTCTAGAATAGCACGGTTCCTCTTGAACTTCCATGACCGCTCTCAAGGCACCTGCACCGTGGGCAAGAGGGTGTTCATCCTCTGGGCATTTTGGTCACTTCCAGCTCTTCCTGCACATGTTATCCAAAATAATGTAGGCAGTGATAGAACAGGCTttcaacactttttaaaatgatctacaaaatgttttcattcattcGCTTTTGGGGTTTTACAATTTAGTACTTTTCCAAatgtatatctattttttttatgccaaaattaaagattaaacagAATACAGATCTTGTAATGAGGTACATATTTTCTTGATTATCAATCATAAATCaagtaaacatattttataccACTTTTTCCATAGGAGGTTTATTTAAGACTTTAATTGGAAGTCCAAGGGTGAATTTGAAATTTTAATTCTTCACCCACCGAGGCAAAGATGCTGGTTAGGGAAGAGACCAATTATTTGCAGTAGATCTTAGCTACTATAAATAGGGAGACGTGGACATTATTTTGGCCTTTTTAACAGTAAATCTTTCAGTCCAGTGGCATTAGAGATGCTTATCATGACGTGGTAAACATCAAATACCAAATTTCAGGTTTAGAAGCTGAACTAATAATTGAAACGCTAAATAGTGTAATATTTAAAGACTAACACAATAAACACTATACGAATAATGCATTTACCACAGTTGAGgtatatatttagtttgaaGAACACGAAAGCAGTCTTAATTTTTGCTTAACATACTAGGTGTACAATGATGTATGACTCACAAATGCTTTTCTACATGCATTTTTGTAGAAGTAGAGAGCCAActatttattatactgtatgaaGAATTGtaaatctttttaaattgtttgatttttcaattttgtaatttgtatacGCAATTGATTTGTTTGATAATGTGTACAGCTAg

Function

GO: NA

KEGG:

id description
K12386 CTNS; cystinosin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196154 lncRNA downstream 13488 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 60556 14318979 ~ 14323114 (-) True G155703
TU196134 lncRNA downstream 77973 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA downstream 77973 14300475 ~ 14305697 (-) False G155701
TU196075 lncRNA downstream 217266 14166179 ~ 14166404 (-) True G155655
TU196199 lncRNA upstream 31396 14422504 ~ 14424746 (-) True G155754
TU196218 lncRNA upstream 98182 14489290 ~ 14491929 (-) True G155768
TU196235 lncRNA upstream 178454 14569562 ~ 14569836 (-) True G155783
TU196367 lncRNA upstream 589276 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 589995 14981103 ~ 14981621 (-) False G155899
AMCG00006015 mRNA downstream 8727 14370409 ~ 14374943 (-) True AMCG00006015
AMCG00006013 mRNA downstream 42067 14336941 ~ 14341603 (-) False AMCG00006013
AMCG00006014 mRNA downstream 111661 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006012 mRNA downstream 126932 14249791 ~ 14256738 (-) True AMCG00006012
AMCG00005996 mRNA downstream 184756 14187248 ~ 14198914 (-) True AMCG00005996
AMCG00006029 mRNA upstream 2346 14393454 ~ 14401173 (-) True AMCG00006029
AMCG00006027 mRNA upstream 50802 14441910 ~ 14445493 (-) True AMCG00006027
AMCG00006026 mRNA upstream 61910 14453018 ~ 14458341 (-) True AMCG00006026
AMCG00006018 mRNA upstream 100897 14492005 ~ 14507388 (-) True AMCG00006018
AMCG00006020 mRNA upstream 155072 14546180 ~ 14546493 (-) True AMCG00006020
TU196147 other downstream 43007 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 212063 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1528867 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1711212 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 3029037 11349245 ~ 11354633 (-) False AMCG00005879
TU196220 other upstream 118125 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 288689 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 391523 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 1042324 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 1098294 15489402 ~ 15491642 (-) False G156088

Expression Profile