RNA id: AMCG00006029


Basic Information

Item Value
RNA id AMCG00006029
length 683
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00006029
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14393454 ~ 14401173 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTCAGTTGTGTGTCAGTGGTGACACAGATGCCTCCTGTTCTGTCTGTGAGTGCAGGACAAACTGCCACCTTGGACTGTAACATTGGGACAGtggataattatatttattggtACAAACAGATTCTGGATGGTGCTCCTCGATTTGTATTGACTtacaaacacattcacacaacttCTACCTATGGAACTGGGTTCTCATCCAGTCGCTTCAATTCCAGAGCCCAGACAAAACATGATTATCAGTTAATCCTGAGCCCTGTTGAGGCAGGAGACTCAGCAGTGGGGAGTTTTTGCATGAGTCTGTATCTGATCTTTACCACAGTGGTATTCGGCCAAGGGACAAAGCTCATTGTCACAGATCAAACTCTCCCGGCGCCCTCTCTGACACTGCACCGCCCGTCCACACAGGAGCTGGACAAGGGCGAGGCCACTCTGGTGTGCCTGGCCAGTAAGATGTCTGTGGGCTACGCCGACGTCAGCTGGACGGCCAACGGGAGTCCAGTGACCACCGGCGTGGTGACCAGTCCGGCCTCGGTGCAGGACGACGGCACCTTCAGCCTGAGCAGCTTCCTCAGCGTGTCCGCGGCGGACTGGGACAGCGACCGCAGCTACTCCTGCACCGTCTCTCAAGGAGGGTCTGCCTCCGCCTCCCGGCAGGTTAAGAAGTCGCAGTGCCTCCTG

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196154 lncRNA downstream 23272 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 70340 14318979 ~ 14323114 (-) True G155703
TU196134 lncRNA downstream 87757 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA downstream 87757 14300475 ~ 14305697 (-) False G155701
TU196075 lncRNA downstream 227050 14166179 ~ 14166404 (-) True G155655
TU196199 lncRNA upstream 21331 14422504 ~ 14424746 (-) True G155754
TU196218 lncRNA upstream 88117 14489290 ~ 14491929 (-) True G155768
TU196235 lncRNA upstream 168389 14569562 ~ 14569836 (-) True G155783
TU196367 lncRNA upstream 579211 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 579930 14981103 ~ 14981621 (-) False G155899
AMCG00006028 mRNA downstream 2346 14383670 ~ 14391108 (-) True AMCG00006028
AMCG00006015 mRNA downstream 18511 14370409 ~ 14374943 (-) True AMCG00006015
AMCG00006013 mRNA downstream 51851 14336941 ~ 14341603 (-) False AMCG00006013
AMCG00006014 mRNA downstream 121445 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006012 mRNA downstream 136716 14249791 ~ 14256738 (-) True AMCG00006012
AMCG00006027 mRNA upstream 40737 14441910 ~ 14445493 (-) True AMCG00006027
AMCG00006026 mRNA upstream 51845 14453018 ~ 14458341 (-) True AMCG00006026
AMCG00006018 mRNA upstream 90832 14492005 ~ 14507388 (-) True AMCG00006018
AMCG00006020 mRNA upstream 145007 14546180 ~ 14546493 (-) True AMCG00006020
AMCG00006019 mRNA upstream 145771 14546944 ~ 14549687 (-) True AMCG00006019
TU196147 other downstream 52791 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 221847 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1538651 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1720996 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 3038821 11349245 ~ 11354633 (-) False AMCG00005879
TU196220 other upstream 108060 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 278624 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 381458 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 1032259 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 1088229 15489402 ~ 15491642 (-) False G156088

Expression Profile