RNA id: AMCG00006032


Basic Information

Item Value
RNA id AMCG00006032
length 5210
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00006032
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14889140 ~ 14907158 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTATCAtgacaaacaggaagtgaccaGTAACTTCCTGGGAGCCATGTGGCTAATTTCAATAACCTTCCTTTCGATTGGTTATGGAGACATGGTGCCTCACACATACTGCGGAAAGGGTGTGTGTCTGCTGACGGGAATTATGGTCAAAAACACGGCTGCAAACGTACTCAGGGAAACATGGCTCatctacaaacacacaaagctggTGAAGAAGATCGATCATGCCAGGGTGCGCAAACACCAGCGCAAGTTCTTGCAGGCCATTCACCAACTTCGCAGTGTGAAAATGGAACAGAGGAAACTGAACGACCAGGCAAATACACTAGTGGACTTGGCCAAGACGCAGAACGTGATGTATGATCTCGTGTCAGAGCTGCAGGAGCGCAGTGAGGAGCTGGACAAGCGCATCGGCACGCTGGAGGATAAGCTGGACTCCATCACCGGCAGCCTGCAGGCCCTGCCTGGCCTGCTCACCCAAGCCATAACGCAGCAGCAGCGGGACTTCCTGGACAGCTTTGCCCACCGTTTCCGGCCAGCCTCCCTGGGCTCGGAGCGCTCATGGACCCCCACTCGCCGGCGGCGCTCCCCCTCCACTGCGCCACACACCTCCTCCGACAGCGGCTAGCCCAAGGCACCGTGCCGCCCAAACGGCCACCGCGGACAGACGATGGTGaaactcaaattaaaacaactaaaagaatgaaaagaaacagaaacaaacaaaacaaacaaaacaaaaaaacggtAGAGAATATGGTTTATGTTTAGCCATTGTATGGCTGTTCAAGTTAGCTTTTTTGTAAAGCCCTTGTATAGTTACTAACTGAGTTCAGGGTGCTGGGGTGAAGCTGGCTATCACACCGGAGAGTCCTTAAACCAGAAGGGATGGAAAACCGCACAGAGCGGCGCTGCTCCGCGAGACACCAGGGGGTGATTGTGTGGCCGGGAGTGGATCTGCCGGGACTGAGAAACGTGGAGGAGAGCAAGAAACACATGAGCAGGGAATGGATATGCAATGGACTTCCTCTTTCACTTGAAAAGTATCAGAGGTCTCCCTGACACCAAGCTGGGAGCTGATGTTCTTTGGAAGCTCTGAAATCGGTATACTGGTGGGAGGCGAGGGAGAAGGGAAGGATGGGACACAACAGGCCAAGAGGGGGTAGGGGTGGCATTATTACCCCAGCGCTGTCAATTaccacaaagacaaacacactaGTGAAGACCTCACATTTGCTCCTACAATCTTAGTTGCAAGTGTAACTTGGAAATTTGGTACACATTGCTCTGTATAGTATGACACATTGTTATCTTGCTTGTAGCGCACATTCAGTGGCTATATAAACAACAGTGGATTGTCTTCCTTTCATATATTTAGGCAAATTCTCATACAAAAGGGTCAGAGTCTATTAATAAACTGGCCCTGGCCGGACATAGTTTGATGTTAAGGAAGTCCCTCAAGCAAAGAATCTGTAAAacaaagagaataaaaaagacCCACATATGTGTTCTGCAGTGAATGAGACAGATGTGAGGATAATTGGTCATTAATACAGAGAGATTCATCAATTTCCATTTCACCTCACTCTGCTGTCTTATTCTGTCAACTTTCTGCCTAGTTACACTCTCCATTTATTTGTGGATGTCAGCATAAGCCCTTATTTAATGTTGAAGAAACCAATGTGTACctctgcaaaaaaacaaaaataatggcCTTGGGAGAGTTATCCTgatttaaaaattcaaaataatttcttGTTCAAACCAGTGACTGATCAGAGCTTCCAAAGAGCTTCGGGCCACCAAGCAGGGAACCAATGAAAAGTGCCCCTTTGCCGGGGCTTCAAGTCTATTGGAAGAGGACAGCAGGCCACACCCACTGTGGACGGGCGGTTTTTAATGACAGAACTGAGAAACAAACCCCGCCCCCTTGCATGTTTCAATGCAATTGGTGATGGAGCTATCCTTCGGGATGGCtttatgttactttttttttcttttatctttttcttttggtttgttttttaccggaattcctttttttatcatttaactaggattttttttaaaaacaggtcAAATCTAATGCTTAACAGAGTGGCAGCAAAAGtgatcattaaaattaattaaaaaaaaatgcattcctaATTCTACCGTATTAATAGCACCACGAGAAATGAATCCAGAATTAATTATTTGGGAAAAATCACAAAACCGAATACACAGTTGGATGCTGTAATCCAATAAGTCCCTAATTTAGCTCCCAGTTCCAAGTTCAGAGCTGGAAGGCCTTTTTAGAAGACGTGTTTGCATCAGACAGCACTGATGACAGAATGAATGTTTAAGATAATATCTTACGGGTTTCAGATACTGTTTCTTATGGGGACTTCGACACGATTTACAAAGCTGTGACGCCTTTGCACAAAGTCAGTTGAATCCAAAGCGGTATTTACCGAGTTGCTTTAGCGTAACAAAAGGTACAGCAGACACTGCATGTCTTCGATCGAGGGTGTGGTGGCAGTGCTTTCTAAAGCAATCTGCAGAAAAGAGGAAAACGGAAGAGATGGTCACGCCTTGATTCATTTCAGCAGTGTCTACTGTTGTGAAGCATAGTTATATTTAGAGTATACATTGTTGTATCAAAGAGGGTCTGTTTCATAGCACTCATTGGCTCTGAACTACTGGGACCCAGGAAAAAGAATGATCAAAATCTGTGTTGGTGCTAAAGGACTACAGCTTTGTGAATAGGGCCAGTACCCTCCAATTTATAAAGAACTGTAAAACCTCAACTGCTGCTAAGCATTTCGGTGACTACTGTAGAAAAAGTGTACCACATTACTGTTTCAAAGTGCCATGGTTCCAACTCCAACTCAAGTGTCTGCAAGTCTGCAAAGCAATCCATCATCCTGGTGTATTCGTTAATGTCCTGATGCATTATGTGGTGTCACGTATGCTTAAGTGGGGAGCACTGCTAAAAGGCGCAGTTTTAACAGGGCAGAACACCGGAGGACTGATTGCCCACACTTGTCcattggtgttgtttttttctcattttgtggGTCTTTAATTAGTTGGTGGTCTATTAAGGACCTGGTACAATCTGGTCTTTGAAAGGATCAAGAACAGCCAAAGAACTGACACTGTGAAGGATttgtggtgaaacatttctgttgtttttgggtttttgttagtttgtctttctctttttttcctttctccgCCGCCGTGTGTGACTCGGAGATATTAATTTCTATTGTCGATAGAAGGCAAATGACAGATGAGATTCGGTGTTTCGTGTAGTTTCCGCACACTGATATTTCATTCTGTGTGAATGAACAGGATTTAAGTTGTACAAAGTCCCTCAGAACTAGGCACAATCCAGGGGAATCTTCCATTTACAGGATTTTCTTGCTGTTGCCATCAAGAAACAAATGTAGCATTTCGGAGGAGTTTCTTAAATCCTTCTGCAGGAGGAAAGTAGGTTTTGTACAGAGAGCAGACAAACTGAATTTGTAGCAGTGCGATGAGTTGTGGATCACCCTCCCAAAATAAGGAAGAATTCTTATCATTTTTGGGTCAGACATagcatacagtttattttaacataatctTTTTAGGAAGTTCTTTGGTGGCAGAATTTTCACCAGGTGACCAAGAACATGTTTGACCTTCTTTTCATCTGGACAGTTCTCTATCATTTTGACACTGTAGACATCTGCCTTTTGGCCAAGCTACTCTATCTCTTGAAGGACTTAAAAGGAATCACAGCTGCTATCTGCTATTAAACAGGCACATTTATTCACACCGACACTCCCAAACATGAACCCTGGCCGCTTGGGTCAAGAAATGCTGGCCGAAGGGATAAAGTAGTGCCTTTGCACTTCATAGGTTGAAGAAGGGGTTTCAATCCCTTATTGGAAAGGCAGAGTTAAGGGCTGGCACAGAGTGTGACCGAGATCTGTCAGGTCCAAAAGTCCAGCAAAAATCAATTTTGAATCAGAGAAGAGGAAAACAGCGAACATGCAAAACACCAGTTTCCTCAAACATGCCCATTTTACAGATAACTGAGTCTAAATTGCAGATTTGTGTCcatgtgtaaatgtttaaatgaaccatgtttttttttttttttttttttgctagcTCAGGGCCATAGATATAGACGACCGGGTTAGTacattgaaatgtgtatatggCTGTTCTGGATCTTGTAAAAGCATGCAAGCTAAAAGATCAGCTCTGtggaatgtgtttgtgtgtgtgtgtgggtgaggaGGGGTTCTCATCTGTTGCAAAcgtagctaaaacagcaatcaAATCCTCCGGTGTTTGTTTTTGGCCCTAATAGGTGAACAGAATTCTTGCACCTCGACTGAGAATAGTTCcacattttttaactttatttttttattggttgCTCCCCCTATgaatgggagagagggaaaggaatTTCCAAACacgcacaaaaataaataagtgaataaataagtggatgATCTTAATGATTCCCAAGACCTGATTGAATGTGACACCACCCAAGAAAGAGtgtaccaaaataaatgtaaaaaggcGCTGTTGTGTTGAACAAACCTGCCCTTTGGGACTTTGAAACAGTGTCtctgtgcattttaatgttGGTGTGGGGGCCCAGAAGACTGTACAGGAAGTAGGAAGCTGTGAATATGCCCTCAATGAGGATATCACAGACCAATGGTGGCTATCAAAGATACGATCAAGCTGTATGCAGCTGAGAAGTCTGCAATCCACCCTTTGTCCTTTACAGTATCAAATTCAAATGGCCCCAAACAGCAGTTCTactcccccccaacccccaggGGCCCACCCATGGCTCGTTCTGTGTACCTACCATTCCCACCCCAGCTTTGCCCCAGCATTTCGGTTCTTATAACAGAATCCAATGATTCATACTCCTCTGTAATAGCCAAATGTCaccacaatgtaaaaaaaaaactaaaaaaaacaaagatgataattatactaataaattaatggaaaaaaataagaagacgCAAGTAAGTATCTATTAGACCATATTATTTCTCGGTAGTGACATCAgatgatttataatttttttaacaggaaaacaaaacaaaaaaatgaaatgtataatcACTGTTTTATATACACTGCCACATTATGCATATCTAGTAGCACTGGAATAAAAAATCTGTAATGAATGGAGAACGGTGA

Function

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 319304 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 397211 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 464394 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 518958 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 566026 14318979 ~ 14323114 (-) True G155703
TU196367 lncRNA upstream 73226 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 73945 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 95252 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 193151 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 271893 15179051 ~ 15217634 (-) False G155989
AMCG00006044 mRNA downstream 13419 14866709 ~ 14875721 (-) True AMCG00006044
AMCG00006046 mRNA downstream 28405 14852157 ~ 14860735 (-) True AMCG00006046
AMCG00006047 mRNA downstream 37261 14850781 ~ 14851879 (-) True AMCG00006047
AMCG00006045 mRNA downstream 75489 14804745 ~ 14813651 (-) True AMCG00006045
AMCG00006043 mRNA downstream 104860 14782506 ~ 14784280 (-) True AMCG00006043
AMCG00006033 mRNA upstream 13245 14920403 ~ 14931385 (-) True AMCG00006033
AMCG00006096 mRNA upstream 74643 14981801 ~ 14992261 (-) True AMCG00006096
AMCG00006102 mRNA upstream 91342 14998500 ~ 15007979 (-) True AMCG00006102
AMCG00006103 mRNA upstream 123829 15030987 ~ 15031803 (-) True AMCG00006103
AMCG00006095 mRNA upstream 135025 15042183 ~ 15044491 (-) True AMCG00006095
TU196327 other downstream 105134 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 206179 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 379526 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 548477 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 717533 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 526274 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 582244 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 1046918 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1547211 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1598435 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile