RNA id: TU196256


Basic Information

Item Value
RNA id TU196256
length 3664
lncRNA type sense_over
GC content 0.43
exon number 2
gene id AMCG00006034
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14652199 ~ 14659497 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCACTGCACGACCTTCCCCTGTTCCACACACAAGGGAGATCGGGTACCTGCACGAGAAGCTGTGCAAGTCCGAGGAGACCATCCAGAAGTTCCAGAGCCTGGTGAAGGAGAGGGACGCCCTGATCCTGCAGCTCCGGCACCGCTGCCACCTGCTCGACAACATCTGTAAGAGCCGGCCACTGCTGGACAGCATGCTGTCCCACATGGCCGAGGCCGAGCGCTTGGGCCCGGTGGCCGGGGGGCTGGGCGAGGCGGCCATGAGTCTCTCACTGACCGACGGGGAGTCCAACTGCAGCCCCGACCGCATCACCAACCACAAGGACTTCTCTCTCAGCGAGGACGACATGGACGACCAGGACCTGGACGAAACCATGTTCGGAACGACTGTATAGTGAGAGGTGCTGGTCAGCGCAGCCCCGGAACACCATGGGAAACTCCCACCCGATCCAAAGCAAGACCCGCTGCACCTTAATGGAGGAGAGCTGCATTTTGAGAAGGCCTGGGGGACCAGTGTGGAGTTGGGTTATAAGAGAGTGAAAACCCTTACTGTTACGAGACACCCTGACCAAGATGGTGGTGAAAAAGCATCAGCTTATATAGGAGTCCCTACTGCAGTGGAATCGTGACTGAATCCCCCACAGAGCTGTCAGGAGTGACTATCAGTGCCAGGTCAGAGGAAGGCTTTATTTCAGGTGAAGAGCAGAAGTGCACCCAACCACCCGGCCTCAGTTTCGAGATTGAATCAGGGCCTGATACATAAAGACCAGTATAGGAATTGTGGGTCTTTAATCTGGTTCCCCCACTTCCTGTTTCTTGCCATTCTATCTGATCATGTGACCAGGGCAAGGGATCAcatggttgttgttttgtgatatTTGGTGAGCTTGGGTGACACTCGTTCATTTCATCGGTTTTGCAGGATGACTGGTGTCAAGATTCATTTTTGGTAAATGAAACTGAAGTTAGGGAAATTtcaatccaaaacaaaacacaaatgtttgatTGTATATTCACCAGTTATGAGGGTCATATGATAAAACTGTACTGCTGCAaattttggattgttttttttaatccaaacattgaatttatttaatgatttccAGCAGGAaccatcttttttttcattcttttgggAAATTTTAGGGGCGATTCCATTTCATTTCAATCTAAGGTTGTGAGCTTTGAAGCAAATACTATTTAACAAacaatcttgtttttttatttaacattaaaaaaaaaattaacttgGGGGGgttagtataaatatatatattttattataaaaatcagtttttttttaataatcttgaTCTGAGAAGGACCCATTTTGGAATGTTCTGCctattaatatatatgcatagaGAGAGACTAAAACCATGTATACATAGATGAgatctataaataaataggttggtgtggatgctgtgctttttgtttagaACAGATCTGTAGGTTTAAAAGTAGTTTGGGGAACTCTTCAGGGaatgtttattgtattcttaACACATTGACCTCTGTAATCGATCACTTATGTGAATTATTAGAATCGATACGCTGACATCTTCTGCAAGGAAGCTATGAATGTAATCTCAGCTGGAGGCTGCATACAGTAGATCTGTGTCTTAATTCCCTGTGTTGCCTGGCATAAGTCACTTTGAGTCACTCGGTCACTTTCACACCTCCAGTTAAAGTCATTTAACTGCTAGGGATTTAAGGGGCAGAGACATCTTGCTGAAAAGAaggttagtttgtttttgagcGTTTAAACAGTTGCTAGTACACAGCATATACCAGCTTAAGGAGAGAACATTCATGTGTATAATTGAGGGCCTGCAAAAGTAGTAGTTGTTGGTAGTGCTGTGCTTAATGAGGCAGTCTATATTAATACAGGTTTTTTTGGGGCATTTCACAATACAAAGATTGGTGGTGGGGTGTGTGTGGCTGTATGGGGGGTTGTTTTCTCTATTTTATAATGTGCAGCTTTAAACATGTGTCCAGGCATGGCTACGTCTGCCCCGTGCGTTGTACCCGTGGACCTGTGGATTGTTTTGAGGACCAGTGTGTTCCAGCTTTGACTCTCAAGTTGCTTCAGTGAAGCGCAGCAGCCTATGCAAGTTTATTTTCGCTTTTCGGTCAACATTCTTGGGCATCTTAGATTGTTtggtgccatttaaaaaaaaatatatatatataccctgaATCGTAAAGTAGATACCGTTACACAGAAAACTAAACTGTTTGTTACAAACACCTGTGCCAGTTGTCTCCCCAATAAGTTCACTCTGCCAGgcaccttattattattattacgatcTCAATATCCAATGTCTCGGCCTCTGATTTCAGTGGTACTTCCTGTACTTTTCCCCTTTTGATCTCCATGAGTTTAATGGAAAATCAATTTGAGCATAGATTGTACATCCAAAGAGGCAGAGTGTGATGTCTCTTGCGGTCAGATGTCCTTTCCTGTTTGCCAGTGGGGCTGTGATACAATACAGCCGGAGTCCTTGGTGAAGGTTGGGGTATGGCGGCCAGCTAATgatacataacatttaaaagtcTCGTATTCTGTGGTGAAGTCCGTGAAAGCTGCTGTAAACCTTAAAGCTGGTTCAGGATTTGCACAAGGTGATCACACAGGGGCCATACAGTTAAACACATTTGTCTGCTGAATAAGAACTGgccatatatatacatatatatagttttataggCAGTGTTAAACACCACTCTGATACtaggtttctgaatgtttatGAAACTAGAACCCAGTACAGACACGCAAGAAGGGGAGGGGATGGGAGACATCTGGTTTTGTATATCGGCTGCCAGCGAACATAAACTATTGTTGCCTTGTGTTGCTAAACCAGTCTGCGTCTTaaccaaaaaatgaaacagtTGAAAGTATGAGCTGTAGTGGTAGTTCTGGGTCTGTCACACTTGTGTACCAGGCTGTGGTTTCCAGATCCCTGCTGGCACTTAGCCTGACAACACAGTAACCACAGTTATCTCCccttgtttctctgcttttaaTGCAAAAGTTATTTATTCTGCTGCACCCCAAAACACCAGCATGGCATCTCAGGTCTCGTTTGTGTTGCGGACTGAATTCGGGCGTCCGGTCAGTCATTGCTTGTCTTTAAGCAATCACCAAAATCCTTCTGTTGTACTCCTCTCCTTTGAACTTCTATGAGATACTCAAAGGGGGTTGTTCATGTGATTTCTGTGGTGCTTCACCGTGCCAGACATCCATCTGTAAATACCAAGTTGGTAAATGGCAGTCTGTCATCTACTTGAAGGatgtaaataattttaatggtatacTTTAGCGACCAGACTTTGGATGCCTGTGTTTGGAGTACACCCCACATTTGCCTTAACTCGGATGGAGAGCCGGTCAGTAGGCCTCTGCAGATGGGGCAGATTGTCTAACTTGCATTTTGGGTGTGGTAATTGGTCAGCTGAAGCGGTTCAAGGtgcttttttaaagatattagcAATAACAAGACTTGATTTGCTATAGACTccactaaaatattaaaagatacAGAAAAGTGTGTTTCCTTGAAAAATACCAAAAGAAAATTCCATTCCCTCATAATTTATGTTTCATTGCAGACTCAAGACAATTACAGTAGGTGAAGTGCATAACatttccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196226 lncRNA upstream 103131 14548596 ~ 14549068 (+) True G155774
TU196225 lncRNA upstream 104046 14547659 ~ 14548153 (+) True G155773
TU196224 lncRNA upstream 104599 14547370 ~ 14547600 (+) True G155772
TU196188 lncRNA upstream 158117 14493726 ~ 14494082 (+) True G155744
TU196169 lncRNA upstream 160323 14489280 ~ 14491876 (+) True G155728
TU196295 lncRNA downstream 100900 14760397 ~ 14761728 (+) True G155832
TU196320 lncRNA downstream 206417 14865914 ~ 14866479 (+) True G155856
TU196363 lncRNA downstream 319808 14979305 ~ 14980490 (+) True G155897
TU196365 lncRNA downstream 321604 14981101 ~ 14981620 (+) True G155898
TU196383 lncRNA downstream 391358 15050855 ~ 15055957 (+) True G155913
AMCG00006016 mRNA upstream 110314 14523381 ~ 14541885 (+) True AMCG00006016
AMCG00006017 mRNA upstream 163802 14485902 ~ 14488397 (+) True AMCG00006017
AMCG00006023 mRNA upstream 167654 14481973 ~ 14484545 (+) True AMCG00006023
AMCG00006024 mRNA upstream 174677 14472606 ~ 14477522 (+) True AMCG00006024
AMCG00006025 mRNA upstream 184941 14466131 ~ 14467258 (+) True AMCG00006025
AMCG00006054 mRNA downstream 11664 14671161 ~ 14681185 (+) True AMCG00006054
AMCG00006056 mRNA downstream 26603 14686100 ~ 14694588 (+) True AMCG00006056
AMCG00006053 mRNA downstream 41294 14700791 ~ 14707124 (+) True AMCG00006053
AMCG00006055 mRNA downstream 82700 14742197 ~ 14756210 (+) True AMCG00006055
AMCG00006042 mRNA downstream 137115 14796612 ~ 14798855 (+) True AMCG00006042
TU196155 other upstream 268619 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 542329 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 553503 14097804 ~ 14098696 (+) True G155637
TU195694 other upstream 1618791 13025764 ~ 13033408 (+) False AMCG00005964
TU195534 other upstream 1938186 12711778 ~ 12714013 (+) False AMCG00005984
TU196402 other downstream 443959 15103456 ~ 15105567 (+) True AMCG00006092
TU196404 other downstream 447712 15107209 ~ 15107734 (+) True G155932
TU196591 other downstream 918587 15578084 ~ 15584761 (+) True AMCG00006065
TU196746 other downstream 1304936 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 1394538 16054035 ~ 16059830 (+) False AMCG00006113

Expression Profile