RNA id: AMCG00006036


Basic Information

Item Value
RNA id AMCG00006036
length 1407
RNA type mRNA
GC content 0.65
exon number 4
gene id AMCG00006036
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14660585 ~ 14662509 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAACCGAGAGAACCGATGTTCGTCTCGTCTCCGTCCTTCGCAGTGAGGACACGATGTCCGCTTTCTCGCTGACGGATCTCGTCCGAGGAGGGCTGAGCATGTCTGGGAGCCCCCCGGACCAGCAGGCTCTCCTGTCCAACGAGGAGCACTGCGAAGGCGATGTGTTGGAGGAGGACAGAGGGTCCTGGAGCCCCCCGTGCTTGGAGCTGCGGAGGAAGATCGCCGCCCAGGTGGAGAGCTACCTGTCGGACAAGAACCTGGCTGAGGACGCCTTCCTGCTGAAACATGTGCAGAGGAACAAGATGGGCTTTGTCCGGGAGCTGACGAGAGACTGGCGCACCACGCTGTATGCCACCCACTGCTCCGAGGCCCTGGAGGTGAACGAGGAAGGGACCAAGGTGAGGCGCCGGCGGCCTGTGCCCAACGCGCTGCTTTGCACCCCCACCAGCAAGCTGCTCCTGGCTTGGAACCTGCTGGGCGAAAGTCAGGCGGAGGAGGCCGGGCGGGGGCAGCACTGCTTGATGGAGACGGCCATGAAGCTCTTTGGGAATCACGGCGCCATCAGCTCCCTCCGCATCCTGCGCCCAGGCAAGGAGTTGCCACCCGAGCTCAAGAAGTACGCCAAGAAGCACTCGGAGCTGGGCCGCAGGGTGTGTGCCGTGGTGGAGTTCGAGTACCTGGAAGGGGCTCGCAAAGCCTACGAGGCCTTCAGGGCGGAGCAGGGTCTGGGCTTCGTCAAGGGCGTGAAGGTGGCCCTCCTGGGCAGCCGAGGCACGCGGAAGAGCTGCTATAGCCAGGACCCTGAGGAGTCGGAGGACCCGGAGGAAAGCGTGGACAGGGTGGCCAGCAAGAAGCCCACCAGGAAAGTCAAGTACTTGCCATACCTGTCGGAAGATTCCTCGGTTTACAGCTCCTCCGAGTCGGACTTCGCCCCTGCCTCGCCCAAGCCCGTCCGCAGGGTGGCCCGTCCCCAGGCCCTCTATGGCAGCCCTCTGGCCGTCCAAAGACCCCAGCCCTCCTACTCCTCCCGCCCCGACCCATTCGGCAGCCCCCTGAGCAGCCCTCTCCTTCCACGGAAGCTGTTCGCTGGTGGGCACGTGCCCTCCCCTCTCGTTGCCCCCGATTTCGGCAGCAGTCCTGTGGCAGTCGGCTCTATCGGGGACGGGCCCAGGTGGTCTGTTGACGGCTCCCCAGACAGCGGGGTCTTGGTCAGCAGCCCCTGGGTGCAGCGGCGCAAGACTGCTGCCCAGATCTTCTTCCCAGAGAAGCCCGGTCCTCCCCTGCCAGGCCTGGGGAGAAGGTCTCAGGTGCTGGTTGTGGTGGTGCGCCAGCCACTCGGTCCTGATGGGACCAGGGGCTTCCACAACTGCATTGGGAGAGGGAATTTCCTGCTCAGACACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 90749 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 168656 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 235839 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 290403 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 337471 14318979 ~ 14323114 (-) True G155703
TU196367 lncRNA upstream 317875 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 318594 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 339901 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 437800 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 516542 15179051 ~ 15217634 (-) False G155989
AMCG00006039 mRNA downstream 8832 14647589 ~ 14651753 (-) True AMCG00006039
AMCG00006035 mRNA downstream 67215 14589371 ~ 14593370 (-) True AMCG00006035
AMCG00006019 mRNA downstream 110898 14546944 ~ 14549687 (-) True AMCG00006019
AMCG00006020 mRNA downstream 114092 14546180 ~ 14546493 (-) True AMCG00006020
AMCG00006018 mRNA downstream 153197 14492005 ~ 14507388 (-) True AMCG00006018
AMCG00006038 mRNA upstream 1049 14663558 ~ 14670355 (-) True AMCG00006038
AMCG00006037 mRNA upstream 18704 14681213 ~ 14682980 (-) False AMCG00006037
AMCG00006057 mRNA upstream 43042 14705551 ~ 14718570 (-) True AMCG00006057
AMCG00006058 mRNA upstream 103486 14765995 ~ 14778085 (-) True AMCG00006058
AMCG00006043 mRNA upstream 119997 14782506 ~ 14784280 (-) True AMCG00006043
TU196220 other downstream 150971 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 319922 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 488978 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1805782 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1988127 12671652 ~ 12672458 (-) False AMCG00005989
TU196273 other upstream 17288 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 120122 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 770923 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 826893 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 1291567 15954076 ~ 15957090 (-) True G156206

Expression Profile