RNA id: AMCG00006037


Basic Information

Item Value
RNA id AMCG00006037
length 603
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00006037
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14679797 ~ 14682980 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGTTTCCTCCGCGGAGGCTCTTCTGCTCATTTCCCAGCATTCCGCCGCGGCCAGGTCTTTCCTGTGTGTCCGCCATTAGAGAAAGCAGGTAAGAATTCAGTGCCGGGAAACGAGAGTCACAATCTCACTAAAATCTCAGGCATCTTTGATTGTCTGCTCTTGTGGCCGATAGTAGAGAGAGTCCTGACTCTGTACTGCCGCCGCAGCGCCGTATCGTTTGATTGCGACTTTAAATAAGaCATGGCGATCAGATATCCTATGGCCGTGGGCCTGAATAAAGGCCACCCAGTCACCAAGAACGTGGCCAAGCCCAAACACAGTCGCAGACGAGGGCACCTGACGAAGCACACCAAGTTTGTGCGGGACATGATCCGTGAGGTGTGTGGCTTCGCCCCGTATGAGAGGCGTGCCATGGAGTTGCTGAAGGTGTCCAAGGACAAGCGCGCCCTCAAGTTCATCAAGAAAAGGGTGGGGACTCACATCCGTGccaagagaaagagggaagagCTGAGCAATGTCCTGGCTGCCATGAGAAAGGCTGCTGCCAAGAAGGATTAAAGTGTAATATTGTGAGAAataaatttgtatttcaaaaacaaa

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006412 translation biological_process
GO:0007420 brain development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 111377 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 189284 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 256467 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 311031 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 358099 14318979 ~ 14323114 (-) True G155703
TU196367 lncRNA upstream 297404 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 298123 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 319430 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 417329 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 496071 15179051 ~ 15217634 (-) False G155989
AMCG00006038 mRNA downstream 10858 14663558 ~ 14670355 (-) True AMCG00006038
AMCG00006036 mRNA downstream 18704 14660585 ~ 14662509 (-) True AMCG00006036
AMCG00006039 mRNA downstream 29460 14647589 ~ 14651753 (-) True AMCG00006039
AMCG00006035 mRNA downstream 87843 14589371 ~ 14593370 (-) True AMCG00006035
AMCG00006019 mRNA downstream 131526 14546944 ~ 14549687 (-) True AMCG00006019
AMCG00006057 mRNA upstream 22571 14705551 ~ 14718570 (-) True AMCG00006057
AMCG00006058 mRNA upstream 83015 14765995 ~ 14778085 (-) True AMCG00006058
AMCG00006043 mRNA upstream 99526 14782506 ~ 14784280 (-) True AMCG00006043
AMCG00006045 mRNA upstream 121765 14804745 ~ 14813651 (-) True AMCG00006045
AMCG00006047 mRNA upstream 167801 14850781 ~ 14851879 (-) True AMCG00006047
TU196220 other downstream 171599 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 340550 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 509606 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1826410 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 2008755 12671652 ~ 12672458 (-) False AMCG00005989
TU196327 other upstream 99651 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 750452 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 806422 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 1271096 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1771389 16454369 ~ 16462159 (-) False AMCG00006083

Expression Profile