RNA id: AMCG00006038


Basic Information

Item Value
RNA id AMCG00006038
length 2028
RNA type mRNA
GC content 0.53
exon number 19
gene id AMCG00006038
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14663558 ~ 14670355 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCCATGGCTTTCCTATTCACTGTTGGACGAGCCGGACAGGCCTGGGCCAGGGACGGCACCCTTGCGATTTTCTGAGAACAGGACCGTCCTTGTGCAAAATTACTGCAACAACAGAGTGGCTTTGTACATGGGAACCAGGCTTTTTCTGACCAGGACAGGCTTTGACGGCTCCTTGTTCCCTCTACACTTCTCTGTAGATGAATCTTTCCAAGGCCTCTCTGGCATTGTCTCTTCTGCTGCCTTTGTGTTGGAGGACCTTGCCCTGGTGATTGATGGCAGGGTTTACATATACggtctaaaaaacaaaaactggactTCTGCCCAAGGTGTGGACTCACTGGTGACGGAGGTCTCTTCCTTACAGTGCTGTTTCAGTAAAGATGCTTCCTGCACGGGTGTGAGCACCACAGTCCTTGCCTACAACAGAGGGCACCCTGTGTCAGATTCGCATGTGTTCCTCTCTTCCAATGGGGGATTCACTTTTGAGAGATTTACTCTGCGACCTACATTACAAAAGAGATTTGTATCTGGCAGGGGGCTGTTGAGGGGGTCTTCAACATACCTGCACTATCAGCCATACTGGTGCTCAAAACAGACAACAATGGCACGCTACGAGTTGTCGGATTTAAACTCGAGCTCCACTGGGTTCTCCCTGAGGGACCCGTCCAGCTCAGTGACTGTGGTCCAGCCCGCAGGCCTCAGTGGACACCTAGTGATCTGGACCCCCCAATCTCTGCTCTTCTCCCCGAACCACGgaCAAGTTGTACTTCCAGTAGAGCTGAGGGGTGATTATGAGGGGGGACAATTCCCGGGCTCTGATGTCATTATCCAGCAGGTCACCACAAGCGAGTACAGCGAGATTGCAGTCCTGACCAGTGGCAGCCTTCTGTACTACGGCACCCTCGGGATGGACGCATCAGTGGTCAAGATCAAGATCCTCACGGATTTCTCCGAGCAGGCAGTGCTCTCTTTCGGCCTGCTTGGAGAGCTGCTGGTGAGCCAGCCGGTTGACGACCCCGATGTGGGGGGGGTGGACTTCAGCCACGAGCTTATCATTGTTCAACATGAGCTCCAACTCGTGACCCCCCCACTGGGCACCTGTCCGGTGGGAATGCTGCATGGCTCGTTTGATGGGCAGGCGTACTACATTGACACGGAAGATGTTTTAGACTTCTCTGCGGTTTTTATTCCCTTGCCCCCCAGTAAAGCTTTTCCTTTGGTAACAGTAACTGATCCGCATATACTGGCTTTTCAAGCGGTCTCTAAAGAAAGTGGCATGACTTCAGAGGGGAACAAGAGATATACACTGCTCTCTGGACGGAGGAATGTCACTGCTTGCACCAAGGGGAAACTTACCCAGAGCACACTGCAGAACTTCTACTCCTACACCATTTCAAAGAACATATACGACCCCCAGGGACTTTTCCGGCAGAATTCAGCAACAGAAGACCTCAATGTGCTCTACAGCTTCGCCGATTACCAATGCCCCCTGCTGGTGAAATATGATTCACTCTGGCTGCCAACCTTCGAACTgtGGGCCAACAGACAGTTTGTGGAGCTTGTCCCAGCGGACTTCGTCTTGTTTGAAGTGCATGGGATGTACAACTATGGTTACCTGCAGAGTGTGAGCAGTACCGACTGTGTATCCCAGCCCCAGACCTGGAGGTCCATGCTGGATGCCCAACTGCAGCCCGACCCCAGCACTGCCTGGACCAGAAGGAATTACAGGAGCTGCAATGACCCAGAAGGGCCCACCCTGACCTCTCCATGGGTATACTATGAGGTTCTGAGAGCTGGCTCGGAGAACAGGATTGCGTTTCCCAACTACAACGGCATTTACATATTCAAAGCCACTGTGGTGGACCCCATGTACAGtTTCTGTGAGCTCTCCACCACCTTCAGCGTCTACGTGTACGGTGCTCCCCCCGAGGAGAGGACTACCAAAGGCTTGGCCCTGGGCATCTTCCTCACCGTATTCATGGGACTGCTGTTATTCCGGTTCGTTTTACAATCTGCACCAAAGGCC

Function

GO: NA

KEGG:

id description
K16895 CATSPERD; cation channel sperm-associated protein subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 93722 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 171629 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 238812 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 293376 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 340444 14318979 ~ 14323114 (-) True G155703
TU196367 lncRNA upstream 310029 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 310748 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 332055 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 429954 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 508696 15179051 ~ 15217634 (-) False G155989
AMCG00006036 mRNA downstream 1049 14660585 ~ 14662509 (-) True AMCG00006036
AMCG00006039 mRNA downstream 11805 14647589 ~ 14651753 (-) True AMCG00006039
AMCG00006035 mRNA downstream 70188 14589371 ~ 14593370 (-) True AMCG00006035
AMCG00006019 mRNA downstream 113871 14546944 ~ 14549687 (-) True AMCG00006019
AMCG00006020 mRNA downstream 117065 14546180 ~ 14546493 (-) True AMCG00006020
AMCG00006037 mRNA upstream 10858 14681213 ~ 14682980 (-) False AMCG00006037
AMCG00006057 mRNA upstream 35196 14705551 ~ 14718570 (-) True AMCG00006057
AMCG00006058 mRNA upstream 95640 14765995 ~ 14778085 (-) True AMCG00006058
AMCG00006043 mRNA upstream 112151 14782506 ~ 14784280 (-) True AMCG00006043
AMCG00006045 mRNA upstream 134390 14804745 ~ 14813651 (-) True AMCG00006045
TU196220 other downstream 153944 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 322895 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 491951 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1808755 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1991100 12671652 ~ 12672458 (-) False AMCG00005989
TU196273 other upstream 9442 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 112276 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 763077 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 819047 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 1283721 15954076 ~ 15957090 (-) True G156206

Expression Profile